TABLE 3.
Genetic similarity and accommodation tent information for the putative transmission clusters of influenza A viruses based on phylogenetic relatedness
| Group name | Group sample composition | Group genetic comparison |
Group accommodation |
||||
|---|---|---|---|---|---|---|---|
| Sequence similarity (%) | No. of nucleotide differences | No. of amino acid differences | No. of shared minor variants | Tent no. | Maximum distance between tents | ||
| H1N1-2013 | SA/2/2013(H1) | 100 | 0 | 0 | 1 | SA11 | <50 m |
| SA/3/2013(H1) | SA8 | ||||||
| H1N1-2015a | AU/12/2015(H1) | 100 | 0 | 0 | 0 | AU2 | 0 m |
| AU/13/2015(H1) | AU2 | ||||||
| H1N1-2015b | AU/11/2015(H1) | 99.95 | 7 | 1 | 1 | AU6 | >2 km |
| SA/22/2015(H1) | SA10 | ||||||
| SA/23/2015(H1) | SA10 | ||||||
| H3N2-2013 | SA/4/2013(H3) | 99.87 | 17 | 2 | 0 | SA31 | <100 m |
| SA/5/2013(H3) | SA16 | ||||||
| H3N2-2014 | AU/6/2014(H3) | 99.85 | 20 | 4 | 1 | AU12 | <100 m |
| AU/7/2014(H3) | AU13 | ||||||
| H3N2-2015a | SA/20/2015(H3) | 99.99 | 2 | 2 | 0 | SA38 | <100 m |
| SA/28/2015(H3) | SA35 | ||||||
| SA/29/2015(H3) | SA38 | ||||||
| H3N2-2015b | AU/16/2015(H3) | 99.95 | 7 | 2 | 0 | AU4 | >2 km |
| SA/25/2015(H3) | SA10 | ||||||
| H3N2-2015c | AU/15/2015(H3) | 99.99 | 2 | 2 | 0 | AU2 | 0 m |
| AU/24/2015(H3) | AU2 | ||||||