TABLE 4.
Number of mapped reads and average coverage
| Influenza A virus name | Subtype | Sample name | Total no. of reads | No. of mapped reads | % mapped reads | Avg coverage per genea |
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PB2 | PB1 | PA | HA | NP | NA | M | NS | ||||||
| A/Saudi Arabia/01/2013 (H3N2) | A(H3N2) | SA/1/2013(H3) | 585,677 | 577,943 | 98.7 | 4,303 | 3,879.5 | 3,415.2 | 7,758 | 8,713.8 | 6,369.4 | 11,105.9 | 3,490.2 |
| A/Saudi Arabia/02/2013 (H1N1) | A(H1N1) | SA/2/2013(H1) | 446,172 | 108,973 | 24.4 | 753.4 | 286.6 | 332.8 | 1,092 | 1,676.2 | 743.4 | 2,207.4 | 2,289.4 |
| A/Saudi Arabia/03/2013 (H1N1) | A(H1N1) | SA/3/2013(H1)a | 360,263 | 352,171 | 97.8 | 2,562.8 | 1,492 | 2,173.5 | 3,320.6 | 4,080.8 | 3,685.3 | 7,465.5 | 8,964.3 |
| A/Saudi Arabia/04/2013 (H3N2) | A(H3N2) | SA/4/2013(H3) | 556,520 | 555,056 | 99.7 | 3,895.4 | 3,491.4 | 3,275.8 | 7,012.4 | 8,067.3 | 6,456.8 | 12,966.7 | 2,990.7 |
| A/Saudi Arabia/05/2013 (H3N2) | A(H3N2) | SA/5/2013(H3) | 513,418 | 491,330 | 95.7 | 3,033.2 | 2,240.1 | 2,674.4 | 5,865.3 | 7,427.4 | 5,305.6 | 15,092.2 | 3,432.9 |
| A/Saudi Arabia/06/2014 (H3N2) | A(H3N2) | AU/6/2014(H3) | 534,829 | 501,038 | 93.7 | 3,243.5 | 3,217.3 | 2,573.5 | 6,888.8 | 8,491.7 | 3,166.1 | 13,631.4 | 2,815 |
| A/Saudi Arabia/07/2014 (H3N2) | A(H3N2) | AU/7/2014(H3) | 608,425 | 552,302 | 90.8 | 4,814.5 | 3,372.2 | 4,534 | 9,018.6 | 5,878.9 | 2,995.7 | 11,389.8 | 4,708.2 |
| A/Saudi Arabia/08/2014 (H3N2) | A(H3N2) | SA/8/2014(H3) | 501,946 | 478,631 | 95.4 | 3,094.9 | 2,745.9 | 2,301.2 | 6,887.9 | 6,334.5 | 6,227.2 | 12,053.2 | 2,273.4 |
| A/Saudi Arabia/11/2015 (H1N1) | A(H1N1) | AU/11/2015(H1) | 563,132 | 538,469 | 95.6 | 3,083.6 | 1,582.4 | 3,153.7 | 4,783.3 | 6,283 | 6,100.4 | 13,959.6 | 14,258.8 |
| A/Saudi Arabia/12/2015 (H1N1) | A(H1N1) | AU/12/2015(H1) | 446,508 | 423,583 | 94.9 | 2,816.9 | 1,926.6 | 3,051.2 | 4,463.3 | 5,409.4 | 4,680.2 | 8,586.9 | 8,167.7 |
| A/Saudi Arabia/13/2015 (H1N1) | A(H1N1) | AU/13/2015(H1) | 665,432 | 166,718 | 25.1 | 796.9 | 911.9 | 687.7 | 2,313.8 | 1,800.2 | 1,514.9 | 3,972.5 | 4,283.3 |
| A/Saudi Arabia/15/2015 (H3N2) | A(H3N2) | AU/15/2015(H3) | 587,802 | 586,569 | 99.8 | 3,997.6 | 4,168.2 | 3,539.1 | 7,258.6 | 8,056.2 | 7,353.7 | 13,729.4 | 1,980.5 |
| A/Saudi Arabia/16/2015 (H3N2) | A(H3N2) | AU/16/2015(H3) | 569,629 | 387,758 | 68.1 | 2,067.8 | 2,004.4 | 2,171 | 4,796 | 5,869.3 | 3,896.1 | 3,941.3 | 2,342.3 |
| A/Saudi Arabia/18/2015 (H3N2) | A(H3N2) | AU/18/2015(H3) | 542,560 | 529,183 | 97.5 | 3,788.8 | 3,177.6 | 3,611.4 | 6,080.1 | 7,541.5 | 6,467.8 | 12,569.5 | 2,356 |
| A/Saudi Arabia/19/2015 (H3N2) | A(H3N2) | SA/19/2015(H3) | 275,979 | 254,627 | 92.3 | 1,862.4 | 1,833.8 | 1,884.7 | 2,729.4 | 3,970 | 2,762.3 | 4,958.7 | 863.6 |
| A/Saudi Arabia/20/2015 (H3N2) | A(H3N2) | SA/20/2015(H3) | 480,547 | 462,532 | 96.3 | 2,673.1 | 2,907.4 | 2,603.8 | 6,743.8 | 6,135.3 | 5,417.4 | 12,755.9 | 1,303.8 |
| A/Saudi Arabia/22/2015 (H1N1) | A(H1N1) | SA/22/2015(H1) | 578,828 | 564,324 | 97.5 | 3,842.8 | 2,024.4 | 3,891.9 | 5,499.2 | 6,754.6 | 6,132.4 | 12,329.1 | 13,329.7 |
| A/Saudi Arabia/23/2015 (H1N1) | A(H1N1) | SA/23/2015(H1) | 584,093 | 484,307 | 82.9 | 3,023.2 | 1,900.4 | 2,989.3 | 5,695.6 | 5,982.8 | 5,400.5 | 10,097.6 | 10,862.1 |
| A/Saudi Arabia/24/2015 (H3N2) | A(H3N2) | AU/24/2015(H3) | 361,703 | 89,999 | 24.9 | 698.5 | 605.8 | 672 | 1364.6 | 1242.4 | 964.2 | 1529.7 | 277.4 |
| A/Saudi Arabia/25/2015 (H3N2) | A(H3N2) | SA/25/2015(H3) | 512,023 | 508,588 | 99.3 | 4,053.7 | 3,627.6 | 3,964.6 | 5,822.5 | 7,096.4 | 4,695.9 | 11,797.4 | 1,688.2 |
| A/Saudi Arabia/26/2015 (H3N2) | A(H3N2) | SA/26/2015(H3) | 760,636 | 56,018 | 7.4 | 335.2 | 341.1 | 512.8 | 899.3 | 661.9 | 595.6 | 1,241.4 | <200 |
| A/Saudi Arabia/27/2015 (H3N2) | A(H3N2) | SA/27/2015(H3) | 577,874 | 184,154 | 31.9 | 1,286.8 | 1,348.6 | 1,192.7 | 2,864.3 | 1,680.3 | 2,055.4 | 3,497 | 365.8 |
| A/Saudi Arabia/28/2015 (H3N2) | A(H3N2) | SA/28/2015(H3) | 569,664 | 569,100 | 99.9 | 4,392.9 | 3,582.5 | 4,047 | 7,001.4 | 7,527.2 | 6,702.9 | 12,772.5 | 1,905.8 |
| A/Saudi Arabia/29/2015 (H3N2) | A(H3N2) | SA/29/2015(H3) | 835,673 | 829,387 | 99.2 | 6,381.6 | 4,895.2 | 5,691.2 | 10,330.7 | 12,065.7 | 8,094.6 | 21,194.4 | 2,376.8 |
| A/Saudi Arabia/31/2015 (H3N2) | A(H3N2) | SA/31/2015(H3) | 579,952 | 579,256 | 99.9 | 3,857.3 | 3,029.5 | 4,436.4 | 7,487.8 | 7,263.8 | 5,713.8 | 12,427.8 | 1,389.8 |
a
Average number of times each nucleotide in the gene is sequenced.