Table 4.
Groups | N | n | h | л | Tajima’s D | Fu’s Fs | Mismatch distribution | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
D | P | Fs | P | θ 0 | θ 1 | P(SSD) | P(HRI) | |||||
mtCOI | ||||||||||||
Lineage N | 249 | 104 | 0.969 ± 0.005 | 0.005 ± 0.003 | −2.119 | 0.000 | −25.842 | 0.000 | 0.689 | 9999 | 0.376 | 0.548 |
Lineage S | 249 | 132 | 0.954 ± 0.008 | 0.006 ± 0.003 | −2.345 | 0.000 | −25.654 | 0.000 | 1.182 | 68.672 | 0.965 | 0.727 |
nrITS | ||||||||||||
Lineage N | 156 | 100 | 0.941±0.015 | 0.003 ± 0.001 | −2.865 | 0.000 | −26.409 | 0.000 | 0.682 | 271.895 | 0.910 | 0.676 |
Lineage S | 139 | 107 | 0.992 ± 0.003 | 0.005 ± 0.002 | −2.650 | 0.000 | −25.135 | 0.000 | 0.796 | 121.719 | 0.782 | 0.689 |
Number of individuals (N), number of haplotypes or ribotypes (n), haplotype diversity (h), nucleotide diversity (л), Tajima’s D and Fu’s F S with corresponding P values for each lineage are shown. θ 0 and θ 1 are θ parameter before and after expansion; P values for the sum of squared deviations (SSD) and raggedness index (HRI) under the hypothesis of sudden expansion of each lineage are also shown.