Table 3.

Upregulated non-carbohydrate-active proteins/enzymes

Spot no.	Method	No. of peptides	Of which unique	Score (−10lgP)	Database entry by PEAKS DB and SPIDER	Name	Categorya
18	PEAKS DB SPIDER	25	20	247.8	Gi|740455585b	ABC transporter	substrate binding protein, NC, SP (1–21)
		50	45	274.5
19	PEAKS DB SPIDER	43	42	234.4	Gi|740455585b	ABC transporter	substrate binding protein, NC, SP (1–21)
		76	69	251.8
20	PEAKS DB SPIDER	2	2	110.7	Gi|740455585b	ABC transporter	substrate binding protein, NC, SP (1–21)
		4	4	143.8
21	PEAKS DB SPIDER	3	3	94.4	Gi|740455585b	ABC transporter	substrate binding protein, NC, SP (1–21)
		5	5	112.9
22	PEAKS DB SPIDER	4	4	118.8	Gi|503373723d	ABC transporter substrate-binding	Solute-binding family 1, NC, SP (1–24)
		5	5	131.2
23	PEAKS DB SPIDER	8	7	156.1	Gi|502813980e	ABC transporter substrate-binding	Solute-binding family 1, TM (weak), SP (1–27)
		8	7	156.1
24	PEAKS DB SPIDER	17	16	197.0	Gi|697632338f	Putative outer membrane protein	Nutrient binding, NC, SP (1–30)
		20	18	203.3
25	PEAKS DB SPIDER	10	7	209.0	Gi|697632338f	Putative outer membrane binding	Nutrient binding, NC, SP (1–30)
		12	8	214.2
26	PEAKS DB SPIDER	2	2	56.3	Gi|489614243b Gi|489608260b	Copper amine oxidase	NC, SP (1–32)
		2	2	56.3
27	PEAKS DB SPIDER	13	13	174.0	Gi|489608992b	Copper amine oxidase	NC, SP (1–22)
		27	27	199.9
28	PEAKS DB SPIDER	2	2	86.2	Gi|489608992b	Copper amine oxidase	NC, SP (1–22)
		6	6	120.3
29	PEAKS DB SPIDER	9	1	155.7	Gi|489613949b	Copper amine oxidase	NC, SP (1–24)
		11	3	160.6
30	PEAKS DB SPIDER	3	3	113.6	Gi|489613949b Gi|500163071b	Copper amine oxidase	NC, SP (1–24)
		3	3	113.6
31	PEAKS DB SPIDER	2	2	83.2	Gi|740459505c Gi|553726325b	Copper amine oxidase	NC, SP (1–26)
		4	2	100.8
32	PEAKS DB SPIDER	1	1	76.4	Gi|740459505c	Copper amine oxidase	NC, SP (1–26)
		2	2	94.4
33	PEAKS DB SPIDER	12	2	184.3	Gi|575090155c	Translation elongation factor G	Protein synthesis
		14	2	186.9
34	PEAKS DB SPIDER	29	4	167.3	Gi|489609866b Gi|575090155c	Translation elongation factor G	Protein synthesis
		36	9	175.8
35	PEAKS DB SPIDER	4	1	144.6	Gi|575090155c	Translation elongation factor G	Protein synthesis
		5	1	152.6
36	PEAKS DB SPIDER	50	2	169.2	Gi|740455515c	Translation elongation factor Tu	Protein synthesis
		55	2	169.2
37	PEAKS DB SPIDER	45	10	241.4	Gi|489611743b	Carboxyl transferase	Gluconeogenesis, TM (weak)
		48	11	244.5
38	PEAKS DB SPIDER	56	9	278.6	Gi|740456462b	Glyceraldehyde-3-phosphate dehydrogenase	Glycolysis
		62	11	281.2
39	PEAKS DB SPIDER	33	5	234.6	Gi|740455993c	Flagellin	Motility
		41	5	241.3

^aIn CAZy database; GH glycoside hydrolase family no., NC non-cellulosomal, SP signal peptide, signal peptide sequence length in brackets, TM transmembrane

^b Ruminiclostridium thermocellum

^c Clostridium straminisolvens

^d Sphaerochaeta globose

^e Aminobacterium colombiense

^f Fermentimonas caenicola