Table 1.
Simulation for SNP data: mean(sd) of true positives (TP) and false positives (FP) based on 100 replicates. Upper panel: (n, p) = (500, 750); Lower panel: (n, p) = (1000, 1500)
| A1 | A2 | A3 | A4 | ||
|---|---|---|---|---|---|
| AR ρ = 0.1 |
TP FP |
41.04(7.07) 37.02(28.65) |
39.28(7.40) 32.02(27.49) |
61.14(2.86) 169.38(18.79) |
53.30(4.23) 83.58(21.61) |
| AR ρ = 0.5 |
TP FP |
64.86(6.89) 32.12(30.54) |
41.46(8.62) 21.84(24.23) |
64.66(2.89) 136.22(11.93) |
57.22(3.96) 60.10(11.60) |
| AR ρ = 0.9 |
TP FP |
74.98(0.14) 9.74(13.31) |
31.22(4.57) 4.30(3.90) |
64.18(2.68) 88.84(12.52) |
51.98(3.11) 30.52(9.67) |
| Block ρ = 0.1 |
TP FP |
47.70(8.62) 61.40(77.21) |
45.82(8.92) 52.22(71.40) |
62.70(2.75) 162.66(18.66) |
55.70(4.20) 79.52(19.80) |
| Block ρ = 0.5 |
TP FP |
67.92(6.35) 31.40(22.18) |
39.62(7.05) 15.74(13.65) |
65.30(3.23) 116.16(13.10) |
57.00(3.68) 43.96(13.36) |
| Block ρ = 0.9 |
TP FP |
72.06(4.16) 12.22(16.30) |
30.28(6.08) 5.08(6.22) |
64.08(2.29) 83.30(12.76) |
50.94(3.44) 27.86(10.81) |
| AR ρ = 0.1 |
TP FP |
94.20(12.15) 77.10(50.90) |
94.16(12.28) 77.62(51.35) |
126.22(4.55) 317.70(22.91) |
113.78(6.27) 165.26(31.10) |
| AR ρ = 0.5 |
TP FP |
142.68(3.61) 28.12(25.50) |
84.28(10.71) 30.82(26.16) |
130.12(3.79) 233.08(16.09) |
116.66(4.48) 103.42(20.82) |
| AR ρ = 0.9 |
TP FP |
149.96(0.20) 33.86(33.25) |
64.40(9.54) 9.26(9.25) |
124.06(3.05) 105.46(17.51) |
98.96(4.46) 25.74(9.43) |
| Block ρ = 0.1 |
TP FP |
101.22(12.37) 72.18(45.32) |
98.96(13.55) 67.76(46.36) |
132.46(3.82) 274.58(18.19) |
121.84(4.57) 129.70(19.58) |
| Block ρ = 0.5 |
TP FP |
145.68(5.93) 62.78(58.00) |
75.84(9.18) 16.22(13.47) |
129.94(3.13) 144.26(17.69) |
114.92(4.25) 45.00(12.74) |
| Block ρ = 0.9 |
TP FP |
147.40(8.42) 27.56(30.66) |
56.32(9.93) 6.36(7.59) |
120.78(4.10) 81.14(13.58) |
92.62(6.34) 19.60(9.02) |