Table 6. GC content of G. thurberi chloroplast genome .
coding region | non-coding region | ||||||||||
protein | trna | rrna | total | IGS | intron | total | Complete genome | LSC | SSC | IR | |
Length (bp) | 79740 | 2775 | 8970 | 91485 | 49915 | 20436 | 70351 | 160264 | 88737 | 20271 | 25628 |
proportion% | 49.76 | 1.73 | 5.60 | 57.08 | 31.15 | 12.75 | 43.90 | 100.00 | 55.37 | 12.65 | 15.99 |
T% | 31.05 | 23.14 | 22.32 | 30.34 | 34.32 | 32.28 | 33.73 | 31.83 | 33.15 | 34.46 | 28.52 |
A% | 29.85 | 24.58 | 22.17 | 29.31 | 34.10 | 30.97 | 33.19 | 30.95 | 31.67 | 33.92 | 28.54 |
C% | 19.28 | 26.13 | 27.79 | 20.56 | 15.99 | 19.12 | 16.90 | 18.99 | 18.11 | 16.54 | 20.66 |
G% | 18.42 | 26.16 | 27.71 | 19.79 | 15.58 | 17.63 | 16.18 | 18.23 | 17.08 | 15.09 | 22.29 |
A+T% | 60.90 | 47.71 | 44.49 | 59.65 | 68.42 | 63.25 | 66.92 | 62.78 | 64.81 | 68.38 | 57.05 |
C+G% | 37.60 | 52.29 | 55.51 | 40.35 | 31.58 | 36.75 | 33.08 | 37.22 | 35.19 | 31.62 | 42.95 |
Note: matK and gene overlaps are analyzed twice. IGS represents inter gene space