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| Spirodela | Butomus | Stratiotes | Zostera | |
| Spirodela | − | 90.2/82.3 | 80.2/73.1 | 61.3/54.8 |
| Butomus | 86 | − | 111.7/112.7 | 67.0/63.1 |
| Stratiotes | 77 | 112 | − | 74.7/69.8 |
| Zostera | 58 | 65 | 72 | − |
Numbers (kb) above the diagonal are from reciprocal BLASTN analyses, and numbers below the diagonal are average values.
