TABLE 5.
Toxins and superantigensa
| ORF name or description | Array | PFGRC/ Affymetrix locus | Presence of ORF in strain:
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UAMS-1 | UAMS-601 | EMRSA-16 | SANGER-476 | MW2 | Mu50 | N315 | RN6390 | NCTC 8325 | COL | |||
| Exotoxin, putative | PFGRC | COL-SA0470 | − | − | − | + | + | + | + | + | + | + |
| Exotoxin 1 | PFGRC | COL-SA0469 | + | + | − | + | + | + | + | + | + | + |
| Exotoxin, putative exotoxin 2 | PFGRC/Affymetrix | COL-SA0472/WAN014GWB | − | − | − | + | + | − | + | + | + | + |
| Exotoxin 3 | PFGRC | COL-SA0468 | − | − | − | − | − | + | + | + | + | + |
| set1 | PFGRC | COL-SA1178 | − | − | − | + | + | + | + | + | + | + |
| set1 | Affymetrix | WAN014IVU | + | + | + | − | − | − | − | − | − | − |
| set2 | Affymetrix | WAN014HIS | + | + | + | − | − | − | − | − | − | − |
| set3 | PFGRC | COL-SA1180 | + | + | + | + | + | + | + | + | + | + |
| set3 | Affymetrix | WAN014HIT | + | + | + | − | − | − | − | − | − | − |
| set4 | PFGRC | COL-SA1179 | − | − | − | + | + | + | + | + | + | + |
| set4 | Affymetrix | WAN014INI | + | + | + | − | − | − | − | − | − | − |
| set5 | Affymetrix | WAN014INH | + | + | + | − | − | − | − | − | − | − |
| set6 | Affymetrix | WAN014G2B | − | − | − | − | − | + | + | − | − | − |
| set7 | Affymetrix | WAN014IV4 | + | + | + | + | + | + | + | + | + | + |
| set8 | Affymetrix | WAN014GW6 | − | − | − | + | + | + | + | + | + | + |
| set9 | Affymetrix | WAN014GWD | − | − | − | + | + | − | + | + | + | + |
| set10 | Affymetrix | WAN014GKN | − | − | − | + | + | + | + | + | + | − |
| set11 | Affymetrix | WAN014GKP | − | − | − | + | − | + | + | + | + | − |
| set12 | Affymetrix | WAN014GKQ | − | − | − | + | + | + | + | + | + | − |
| set13 | Affymetrix | WAN014IMJ | − | − | − | + | + | + | + | + | + | + |
| set13 (N315), set5 (COL) | PFGRC | COL-SA0473 | − | + | − | + | + | + | + | + | + | + |
| set14 | Affymetrix | WAN014IMK | − | − | − | + | + | + | + | + | + | + |
| set14 (N315), set4 (COL) | PFGRC | COL-0474 | − | − | − | + | + | + | + | + | + | + |
| set15 | Affymetrix | WAN014G2E | − | − | − | − | − | + | + | − | − | − |
| set15 (N315), exotoxin 3 (COL) | PFGRC | COL-SA0478 | − | − | − | − | − | + | + | + | + | + |
| set16 | Affymetrix | WAN014HQV | + | + | + | + | + | − | − | − | − | − |
| set19 | Affymetrix | WAN014GWE | − | − | − | + | + | − | − | − | − | − |
| set21 | Affymetrix | WAN014FU6 | − | − | − | + | + | − | − | − | − | − |
| set26 | Affymetrix | WAN014FUA | − | − | − | + | + | − | − | − | − | − |
| Similar to set19 | Affymetrix | WAN014HQY | + | + | + | − | − | − | − | − | − | − |
| Similar to set21 | Affymetrix | WAN014GKO | − | − | − | − | − | − | − | + | + | − |
| Similar to set26 | Affymetrix | WAN014HQZ | + | + | + | − | − | − | − | − | − | − |
| seb | PFGRC/Affymetrix | COL-SA0907/WAN014HGZ | − | − | − | − | − | − | − | − | − | + |
| sec3 | Affymetrix | WAN014IW4 | − | − | − | − | + | + | + | − | − | − |
| sei | Affymetrix | WAN014HJJ | + | + | + | − | − | + | + | − | − | − |
| seg | Affymetrix | WAN014HHY | + | + | + | − | − | + | + | − | − | − |
| seh | Affymetrix | WAN014HMA | − | − | − | + | + | − | − | − | − | − |
| sei (COL), seg2 (MW2) | PFGRC/Affymetrix | COL-SA0887/WAN014ITN | − | − | − | + | + | − | − | − | − | + |
| sek, ent (COL) | PFGRC/Affymetrix | COL-SA0886/WAN014ITM | − | − | − | + | + | − | − | − | − | + |
| sel | Affymetrix | WAN014IRW | − | − | − | − | + | + | + | − | − | − |
| sem | Affymetrix | WAN01BUE4 | + | + | + | − | − | − | − | − | − | − |
| sem | Affymetrix | WAN01CAT8 | − | − | − | − | − | + | + | − | − | − |
| sen | Affymetrix | WAN014HK5 | + | + | + | − | − | + | + | − | − | − |
| seo | Affymetrix | WAN014HK2 | + | + | + | − | − | + | + | − | − | − |
| sep | Affymetrix | WAN014GK5 | − | − | − | − | − | − | + | − | − | − |
| entP | Affymetrix | WAN014HLS | + | + | + | + | + | + | − | − | − | − |
| yent1 | Affymetrix | WAN014HK3 | + | + | − | − | − | + | + | − | − | − |
| yent2 | Affymetrix | WAN014HK4 | + | + | + | − | − | + | + | − | − | − |
| Staphylococcal enterotoxin, putative | PFGRC | COL-SA0442 | − | − | − | + | + | + | + | + | + | + |
| Enterotoxin family protein | PFGRC | COL-SA1657 | + | + | + | + | + | + | + | + | + | + |
| Diarrheal toxin-like protein | PFGRC | COL-SA0265 | + | + | + | + | + | + | + | + | + | + |
| Probable hemolysin | PFGRC | COL-SA0762 | + | + | + | + | + | + | + | + | + | + |
| Probable hemolysin | PFGRC | COL-SA2160 | + | + | + | + | + | + | + | + | + | + |
| Gamma hemolysin A (hlgA) | PFGRC | COL-SA2419 | + | + | + | + | + | + | + | + | + | + |
| Gamma hemolysin B (hlgB) | PFGRC | COL-SA2422 | + | + | + | + | + | + | + | + | + | + |
| Gamma hemolysin C (hlgC) | PFGRC | COL-SA2421 | + | + | + | + | + | + | + | + | + | + |
| Leukotoxin lukD | PFGRC | COL-SA1880 | − | − | − | + | + | + | + | + | + | + |
| Leukotoxin E (lukS) | PFGRC | COL-SA1881 | − | − | − | + | + | + | + | + | + | + |
| Possible leukocidin lukM | PFGRC | COL-SA2006 | − | − | − | + | + | + | + | + | + | + |
| Leukocidin E subunit precursor | PFGRC | COL-SA2004 | − | − | − | + | + | + | + | + | + | + |
a
Only microarray results are given, not Southern hybridization results.