TABLE 6.

Regulatory elements^a,b

ORF name or description	PFGRC/Affymetrix locus no.	Presence of ORF in strain:
		UAMS-1	UAMS-601	EMRSA-16	SANGER-476	MW2	Mu50	N315	RN6390	NCTC 8325	COL
agrA	Affymetrix	+	+	+	+	+	+	+	+	+	+
agrD-1	Affymetrix	−	−	−	−	−	−	−	+	+	+
agrD-2	Affymetrix	−	−	−	−	−	+	+	−	−	−
agrD-3	Affymetrix	+	+	+	+	+	−	−	−	−	−
agrD-4	Affymetrix	−	−	−	−	−	−	−	−	−	−
saeR	SA0766	+	+	+	−	+	+	+	+	+	+
saeS	SA0765	+	+	+	+	+	+	+	+	+	+
arlS	SA1450	+	+	+	+	+	+	+	+	+	+
Rot	SA1812	+	+	+	+	+	+	+	+	+	+
sarA	SA0672	+	+	+	+	+	+	+	+	+	+
sarS (sarH1)	SA0096	+	+	+	+	+	+	+	+	+	+
sarR	SA2287	+	+	+	+	+	+	+	+	+	+
sarT	SA2506	−	−	−	+	+	+	+	+	+	+
sarU	SA2507	−	−	−	+	+	+	+	+	+	+
sarV	SA2258	+	+	+	+	+	+	+	+	+	+
svrA	SA0416	+	+	+	+	+	+	+	+	+	+
srrAB	SA1534	+	+	+	+	+	+	+	+	+	+
Trap	SA1891	−	−	−	+	+	+	+	+	+	+
yycG	SA0020	+	+	+	+	+	+	+	+	+	+
lrgB	SA0248	+	+	+	+	+	+	+	+	+	+
Lytic regulatory protein	SA2140	+	+	+	+	+	+	+	+	+	+
vraR	SA1905/1942	+	+	+	+	+	+	+	+	+	+
deoR family transcriptional regulator	SA0757/1964	+	+	+	+	+	+	+	+	−	+
lysR family transcriptional regulators	SA0072/0074	−	−	−	+	+	−	−	+	+	+
marR family transcriptional regulator	SA2524	−	−	−	−	−	−	−	+	+	+
gntR family transcriptional regulator	SA0091	−	−	−	−	−	+	+	+	+	+

^aSeveral transcriptional regulator protein families were conserved among all study strains, according to PFGRC microarray data: Cro/Cl family (SA0420); rpiR family (SA0179); luxR family (SA2389); lacl family (SA1552); argR family (SA1565); sir2 family (SA2189); merR family (SA2193/SA2388/SA2517); deg family (SA2086); fur family (SA1541/SA1611/SA1919); and tetR family (SA2349/SA2374/SA2587/SA2593/SA2610).

^bOnly microarray results are given, not confirmatory Southern hybridization results.