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. 2005 Jan;187(2):488–497. doi: 10.1128/JB.187.2.488-497.2005

TABLE 2.

Transcriptional effect of sequences downstream of the C boxes

Downstream enda pvuIIC alleleb CAT activityc
Absolute Normalized
−24 WT 271 ± 20 0.03
Esp19 748 ± 23 0.08
+88 WT 8,998 ± 1,117 1.00
Esp19 514 ± 44 0.06
a

The number of nucleotides from the native pvuII sequence between the C boxes and the reporter gene cloning junction. In both cases, the 5′ endpoints are −93 (relative to the pvuIIC initiation codon). The 3′ endpoints correspond to +3 and +114, respectively, relative to the previously reported promoter (60). In all cases, the consensus C boxes are present in the context of an otherwise WT pvuIIC sequence. In the longer clones, a short substitution immediately downstream of the 3′-most C box generates a restriction site used for clone assembly; substitutions in this area were found not to affect transcription (see text).

b

C.PvuII is supplied in trans from either the WT allele or a mutant inactive allele in which an extra codon has been inserted within the predicted HTH motif.

c

CAT activity was measured as described in Materials and Methods and is expressed (± the standard error) as mean counts per minute incorporated per minute per microgram of protein from triplicate samples. The vector control levels (not shown) were subtracted as background.