TABLE 1.
Strain or primer | Genotype or sequence | Reference or source |
---|---|---|
Strains | ||
S. coelicolor | ||
M600 | SCP1− SCP2− | 28 |
M145 | SCP1− SCP2− | 28 |
J660 | bldC18 mthB2 cysD18 agaA7 SCP1NF SCP2* | 34 |
J2161 | ΔbldC::apr derivative of M600 | This work |
J2162 | ΔbldC::apr derivative of J660 | This work |
J2166 | ΔbldC derivative of M600 | This work |
J2167 | ΔbldC::apr derivative of M145 | This work |
J2168 | ΔbldC derivative of M145 | This work |
J2169 | bldC+ derivative of J660 | This work |
J3210 | bldC18 derivative of M600 | This work |
J3211 | bldC18 derivative of M145 | This work |
J1700 | bldA39 hisA1 uraA1 strA1 SCP1− SCP2− | 30 |
J669 | bldB43 mthB2 cysD18 agaA7 SCP1NF SCP2* | 34 |
J774 | bldD53 cysA15 pheA1 mthB2 strA1 SCP1NF SCP2* | 34 |
166 | bldF hisD3 pheA1 strA1 SCP1+ SCP2+ | 43 |
WC103 | bldG103 hisA1 uraA1 strA1 Pgl−SCP1− SCP2− | 7 |
WC109 | bldH109 hisA1 uraA1 strA1 Pgl−SCP1− SCP2− | 7 |
HU261 | bldJ261 hisA1 uraA1 strA1 Pgl− SCP1NF SCP2* | 50 |
NS17 | bldK::aadA derivative of M145 | 39 |
J2151 | ΔglkA119 bldM::hyg SCP1− SCP2− | 35 |
J2177 | ΔglkA119 bldN::hyg SCP1− SCP2− | 2 |
Primers | ||
Cloning and mutagenesis primers | ||
BLDC1 | CGTCGCTTGGAGCTGTGGTTCC | |
BLDC2 | TGCCGACAAGGGACGTAGGTCC | |
BLDC5 | CCGCATATGACCGCTCGTACCCCGGACGCTGAGCCGCTGCTGACC | |
BLDC6 | CCCGGTTATTCAGTTGTTCAGG | |
Y49F FOR | TTCCGCGAAGCCGAGGTCCG | |
Y49F REV | GCGGCGATGCCCGCCGAGCG | |
Gene disruption primers | ||
BLDC K-OUT FOR | ATGAACCGAGAAGGTTCGGTTCTCCCGAGGAGGCCGCTCATTCCGGGGATCGTCGACC | |
BLDC-K-OUT REV | GGTTGGGGGACCCGCCGTTCTGCCCGGTTATTCAGTTGTTGTAGGCTGGAGCTGCTTC | |
S1 nuclease mapping and runoff primers | ||
BLDC2 | See cloning and mutagenesis primers | |
BLDC3a | GAACATGGTGGCGACCTCAGCC | |
BLDC4 | TATATACTGTGACTGATCGTCACAGAGG | |
BLDC17 | GAGCGGCCTCCTCGGGAG | |
BLDC25a | GCACCTTGACCCGCGTTGCC | |
ACTIIORF4.1a | GTACGTCTGCAGCGTCGTCATGGCGCT | |
ACTIIORF4.2 | ATCGGAGATCGCTTGTGACGGCA | |
HRDB FOR | CGCAAGGTACGAGTTGATGACC | |
HRDB REVa | CCATGACAGAGACGGACTCGG | |
REDD.1a | GATCGATACGGGTCCCAATA | |
REDD.JW2 | CATGGATCCTGCTTCGTTTGCGTCGTTCAGTTC | |
REDZ.1a | CTCCAGCAATGCGCGAAT | |
REDZ.2 | CGTGCACGTGTCCTTCTG |
Labeled primers.