Table 1.
Transcription factor binding sites in 5′-LTR PQS.
| Group | Lentivirus | Transcription factor binding sites in LTR PQS | Ref |
|---|---|---|---|
| Primate | HIV-1 M | GGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGG | 49 |
| SIVcpz | GGGACTTTCCAAGGGACGTTCCAAGGGGGTGGGTCAGGGCGGAACAGGGCGTGG | ||
| HIV-2 | GGGACTTTCCAGAAGGGGCTGTAACCAAGGGAGGGACATGGGAGGAGCTGGTGGGG | 49 | |
| SIVmac | GGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGG | 50 | |
| SIVsm | GGGACTTTCCACAAGGGGCTGTCATGGGGAGGTACTGGGGAGGAGCTGGCTGG | ||
| SIVstm | GGGACTTTCCACAAGGGGCTGTAACAGGGGAGGTACTGGGAGGAACTGGTGGGG | ||
| HIV-1 N | GGGACTTTACACATGGGGACTTTCCGCCGGGGACTTTCCAGGG | ||
| HIV-1 O | GGGACTTTCCAGTGGGAGGGACAGGGGGCGGTTCGGGGAGTGG | ||
| SIVgor | GGGACTTTCCGTGGAGGAAAGTCCCCGGGGGCGGAACTGGGAGGAGCAGGGGAGTGG | ||
| SIVcol | GGGACTTTCCGTTCGGGACTTTCCAAGTTGGGAGGGACCTGGGCGGAGGGAAGGG | ||
| SIVmne | GGGACTTTCCATAAGGGGATGTCATGGGGGGGTACTGGGGAGGAGCTGGTCGGG | ||
| SIVver | GGGACTTTCCAGCACGGGACTTTCC AAGGCGGGACATGGGCGGTACGGGGAGTGG | ||
| SIVwcm | GGGACTTCTAGCGGGACTTTCC AGGCGGTCATGGCGGTACGGGAGTGG | ||
| SIVrcm | GGGACTTTCCACTGGCGCCTGCGCGCTGGTGTAAGGGACTTTCCAGACTGACGTGGGAGGGGGGTGTGG | ||
| SIVgrv | GCGGTTGGGACTTTCCGCCAGGGACTTTCCACAGTGGGTGGATCGGAGGCGGTACAGGGGCGGTACTGGGAGTGG | ||
| SIVtal | GGGACTTTCCACGTTGCTAAGGCAACGGGGGACGGACTGGGGCGGGGAGCGGGAGGAGTTGGGAGTGG | ||
| SIVlhoest | GGGACTTTCCAGGACGGGCGGGGGAGG | ||
| SIVmnd-1 | GGGACTTTCCAAACAGGGAGGGGGAGG | ||
| SIVsun | GGGACTTTCCGGACAGGGAGGGGGAGG | ||
| SIVpat | GGGACTTCCCAGGGTGGAGACTGGGCGGTACTGGGAGTGG | 51 | |
| SIVagm sab1 | GGGACTTTCC AGGGTGGAGACTGGGCGGTACTGGGAGTGG | ||
| SIVagm tan1 | GGGACTTTCC AGGGTGGTGCGAGGGCGGTACTTGGGAGTGG | ||
| SIVmus1 | GGGACTTTCCAGTCACCATGACTACGGGGCCCGGTTGCTGAGGCAATCGGGGCGGACTCGTGGGTGGGACTGGGCGGTACTGGGAGTGG | ||
| SIVmus3 | GGGACTTTCCAGTTACCATGACTACGGGGCTGGTTGCTGAGGCAACCAGGGCGGACTCGTGGGTGGGACTGGGAGGAACGGGGAGTGG | ||
| SIVdeb | GGGGAGGGCCTGGGTGGTACGGGGAGTGG | ||
| SIVsyk | GGCCCAGGGGAGGAGCCTGGGCGGGGGAAGG | ||
| SIVwrc | GGGACATTGGGAGGAGACTGGGAGGTGCCTTGTGG | ||
| SIVden | GGGCGGACTCAGGGGAGGGCCTGGGAGGTCTCTGGG | ||
| SIVgsn | GGGCGGACTCGTGGGTGGGACTGGGAGGCCGGGAGTGG | ||
| SIVdrl | GTGGCAGGGACTTTCCAGGGTGACGTGGGTTGGGGGAGTGG | ||
| SIVmon | GGGGCCCGGTTGCTGCGGCAACCGGGCGGTCCAAAGGACTTGGTGGGTGGACCCGGGGAGTGG | ||
| SIVmus2 | GGGGCCCGGTTGCCGCAGCAACCGGGGCGGACTCAGGGCGGACTGGGAGGGACCTGAGAGTGG | ||
| Bovine | JDV | GGGGAGAAAGGGAACAGGTGGGGACGACCGGG(ACCTTTCC) |
Binding sites for NFκB are in bold. Sp1 binding sites reported in the literature are indicated in italics and are underlined. Sp1 binding sites predicted by Physbinder are underlined.