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. 2017 Apr 6;18(2):105–108. doi: 10.1038/gene.2017.5

Table 2. Conditional analysis of SNP associations at IL23R–IL12RB2 intergenic region.

Positiona Conditional SNP Risk/protective SNP P OR RAF (case/control) LD (r2/D′) with conditional SNP
Chr1:67706208 rs11209026 G/A rs11209032 2 × 10−8 1.2 0.96/0.93 0.03/0.97
      rs6677188 <3 × 10−3 0.9   0.01/0.87
      rs924080 2 × 10−3 0.9   0.07/0.94
      rs11578380 2 × 10−4 1.1   0.04/0.94
Chr1:67740342 rs11209032 A/G rs11209026 <9 × 10−14 0.6 0.37/0.33 0.03/0.97
      rs6677188 0.2 1.0   0.17/1
      rs924080 0.3 1.0   0.38/1
      rs11578380 0.8 1.0   0.5/0.95
Chr1:67760140 rs924080 T/C rs11209026 9 × 10−14 0.6 0.58/0.54 0.07/0.94
      rs11209032 3 × 10−6 1.2   0.38/1
      rs6677188 0.05 1.1   0.43/1
      rs11578380 0.06 1.1   0.61/0.95
Chr1:67761365 rs11578380 G/C rs11209026 <4 × 10−14 0.6 0.47/0.44 0.04/0.94
      rs11209032 1 × 10−5 1.2   0.5/0.95
      rs6677188 0.3 1.0   0.23/0.89
      rs924080 0.1 0.9   0.61/0.95

Abbreviations: Chr., chromosome; LD, linkage disequilibrium; OR, odds ratio; RAF, risk allele frequency; SNP, single-nucleotide polymorphism.

a

NCBI Build 37 human genome coordinates.