Table 1.
Distribution of small RNAs among different categories in three libraries.
| Category | BE0h | BE6h | BE24h | |||
|---|---|---|---|---|---|---|
| Total | Unique | Total | Unique | Total | Unique | |
| Raw reads | 8,401,329 | 941,574 | 10,009,977 | 1,344,881 | 8,029,349 | 1,231,079 |
| 3ADT & length filter | 5,839,180 | 465,531 | 3,013,669 | 551,840 | 2,969,128 | 574,094 |
| Junk reads | 5,853 | 3,549 | 14,968 | 8,562 | 10,750 | 6,336 |
| Rfam | 485,876 | 39,348 | 990,789 | 57,110 | 875,868 | 60,392 |
| Repeats | 6,243 | 1,863 | 14,144 | 2,982 | 16,211 | 3,013 |
| rRNA | 216,044 | 26,282 | 515,833 | 36,808 | 489,412 | 36,989 |
| tRNA | 225,325 | 8,025 | 338,444 | 11,798 | 280,879 | 14,854 |
| snoRNA | 5,546 | 976 | 29,390 | 1,620 | 21,651 | 1,764 |
| snRNA | 4,264 | 989 | 6,413 | 1,382 | 5,884 | 1,399 |
| Other Rfam RNA | 34,697 | 3,076 | 100,709 | 5,502 | 78,042 | 5,386 |
| Clean reads | 2,065,391 | 431,479 | 5,981,827 | 724,767 | 4,162,569 | 587,701 |