Table 1.
Differentially expressed proteins in RA-treated and control dendritic cells
| Accession | Description | RA/Ctrl-1 | RA/Ctrl-2 | RA/Ctrl-3 | RA/Ctrl-4 |
|---|---|---|---|---|---|
| D3Z2R5 | Protein Sepn1 OS=Mus musculus GN=Sepn1 PE=4 SV=1 - [D3Z2R5_MOUSE] | 0.180 | 0.396 | 0.368 | 0.808 |
| E9PWW9 | Protein Rsf1 OS=Mus musculus GN=Rsf1 PE=1 SV=1 - [E9PWW9_MOUSE] | 0.251 | 0.283 | 0.560 | 0.630 |
| Q9EQC5 | N-terminal kinase-like protein OS=Mus musculus GN=Scyl1 PE=1 SV=1 - [NTKL_MOUSE] | 0.268 | 0.797 | 0.663 | 1.968 |
| Q0VGP9 | Calpain-3 OS=Mus musculus GN=Capn3 PE=2 SV=1 - [Q0VGP9_MOUSE] | 0.354 | 0.460 | 1.025 | 1.332 |
| P07091 | Protein S100-A4 OS=Mus musculus GN=S100a4 PE=1 SV=1 - [S10A4_MOUSE] | 0.356 | 0.326 | 0.388 | 0.340 |
| E9QNG1 | Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=1 - [E9QNG1_MOUSE] | 0.387 | 0.403 | 1.164 | 1.212 |
| Q3TL72 | NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1 - [Q3TL72_MOUSE] | 0.406 | 0.640 | 0.751 | 1.182 |
| D3YWB3 | Transmembrane channel-like protein OS=Mus musculus GN=Tmc4 PE=3 SV=1 - [D3YWB3_MOUSE] | 0.436 | 0.503 | 0.670 | 0.773 |
| Q68EF0 | Rab-3A-interacting protein OS=Mus musculus GN=Rab3ip PE=1 SV=1 - [RAB3I_MOUSE] | 0.450 | 0.380 | 1.513 | 1.276 |
| Q61878 | Bone marrow proteoglycan OS=Mus musculus GN=Prg2 PE=1 SV=1 - [PRG2_MOUSE] | 0.454 | 0.567 | 0.468 | 0.585 |
| Q3KPB0 | Olfactory receptor OS=Mus musculus GN=Olfr616 PE=2 SV=1 - [Q3KPB0_MOUSE] | 0.455 | 0.552 | 0.558 | 0.676 |
| Q67BT3 | Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1 - [S13A5_MOUSE] | 0.485 | 0.626 | 0.563 | 0.671 |
| P14069 | Protein S100-A6 OS=Mus musculus GN=S100a6 PE=1 SV=3 - [S10A6_MOUSE] | 0.509 | 0.457 | 0.557 | 0.502 |
| Q8C7V8 | Coiled-coil domain-containing protein 134 OS=Mus musculus GN=Ccdc134 PE=2 SV=1 - [CC134_MOUSE] | 0.516 | 0.747 | 0.708 | 1.025 |
| Q9R0A0 | Peroxisomal membrane protein PEX14 OS=Mus musculus GN=Pex14 PE=1 SV=1 - [PEX14_MOUSE] | 0.518 | 1.022 | 0.636 | 0.623 |
| Q64444 | Carbonic anhydrase 4 OS=Mus musculus GN=Ca4 PE=1 SV=1 - [CAH4_MOUSE] | 0.547 | 0.429 | 0.554 | 0.481 |
| P08207 | Protein S100-A10 OS=Mus musculus GN=S100a10 PE=1 SV=2 - [S10AA_MOUSE] | 0.547 | 0.571 | 0.554 | 0.586 |
| A2AQ89 | SH2 domain-containing adapter protein F (Fragment) OS=Mus musculus GN=Shf PE=1 SV=1 - [A2AQ89_MOUSE] | 0.560 | 0.618 | 0.550 | 0.606 |
| Q8BNU0 | Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2 SV=1 - [ARMC6_MOUSE] | 0.574 | 0.627 | 0.875 | 0.956 |
| Q9QZW0-2 | Isoform 2 of Phospholipid-transporting ATPase 11C OS=Mus musculus GN=Atp11c - [AT11C_MOUSE] | 0.577 | 0.525 | 0.758 | 0.690 |
| E9PYI6 | Protein Simc1 OS=Mus musculus GN=Simc1 PE=4 SV=1 - [E9PYI6_MOUSE] | 0.579 | 0.614 | 0.747 | 0.747 |
| P08101-2 | Isoform IIB2 of Low affinity immunoglobulin gamma Fc region receptor II OS=Mus musculus GN=Fcgr2 - [FCGR2_MOUSE] | 0.580 | 0.587 | 0.621 | 0.628 |
| P20152 | Vimentin OS=Mus musculus GN=Vim PE=1 SV=3 - [VIME_MOUSE] | 0.581 | 0.609 | 0.663 | 0.681 |
| Q5PPR2 | Exocyst complex component 1 OS=Mus musculus GN=Exoc1 PE=1 SV=1 - [Q5PPR2_MOUSE] | 0.583 | 0.531 | 0.929 | 0.846 |
| Q8BG67-2 | Isoform 2 of Protein EFR3 homolog A OS=Mus musculus GN=Efr3a - [EFR3A_MOUSE] | 0.588 | 0.651 | 0.241 | 0.267 |
| Q8K4S1 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 OS=Mus musculus GN=Plce1 PE=1 SV=3 - [PLCE1_MOUSE] | 0.593 | 0.606 | 0.555 | 0.566 |
| A2AP58 | Protein Sptbn5 (Fragment) OS=Mus musculus GN=Sptbn5 PE=4 SV=1 - [A2AP58_MOUSE] | 0.599 | 0.769 | 0.572 | 0.733 |
| P04117 | Fatty acid-binding protein, adipocyte OS=Mus musculus GN=Fabp4 PE=1 SV=3 - [FABP4_MOUSE] | 0.605 | 0.598 | 0.597 | 0.567 |
| E9QKK1 | Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=3 SV=1 - [E9QKK1_MOUSE] | 0.614 | 0.691 | 0.686 | 0.762 |
| Q99MV1 | Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2 - [TDRD1_MOUSE] | 0.615 | 0.885 | 0.715 | 0.926 |
| E9Q264 | Protein Myh15 OS=Mus musculus GN=Myh15 PE=4 SV=1 - [E9Q264_MOUSE] | 0.644 | 0.572 | 0.757 | 0.671 |
| Q8R1H8-2 | Isoform 2 of Basic leucine zipper transcriptional factor ATF-like 2 OS=Mus musculus GN=Batf2 - [BATF2_MOUSE] | 0.646 | 0.680 | 0.654 | 0.752 |
| Q8R1F1 | Niban-like protein 1 OS=Mus musculus GN=Fam129b PE=2 SV=2 - [NIBL1_MOUSE] | 0.657 | 0.715 | 0.710 | 0.773 |
| E9Q0F0 | Protein Krt78 OS=Mus musculus GN=Krt78 PE=4 SV=1 - [E9Q0F0_MOUSE] | 0.658 | 0.535 | 1.125 | 0.914 |
| Q497J0 | MCG130175, isoform CRA_b OS=Mus musculus GN=BC100530 PE=2 SV=1 - [Q497J0_MOUSE] | 0.659 | 0.687 | 0.617 | 0.678 |
| S4R2S8 | Ankyrin-3 OS=Mus musculus GN=Ank3 PE=4 SV=1 - [S4R2S8_MOUSE] | 0.662 | 0.702 | 0.701 | 0.634 |
| P07356 | Annexin A2 OS=Mus musculus GN=Anxa2 PE=1 SV=2 - [ANXA2_MOUSE] | 0.663 | 0.670 | 0.690 | 0.697 |
| B8XCJ6 | Protein unc-80 homolog OS=Mus musculus GN=Unc80 PE=2 SV=1 - [B8XCJ6_MOUSE] | 0.664 | 0.756 | 0.721 | 0.820 |
| P10605 | Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2 - [CATB_MOUSE] | 1.505 | 1.558 | 1.391 | 1.460 |
| O89017 | Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1 - [LGMN_MOUSE] | 1.535 | 1.426 | 1.560 | 1.308 |
| D3Z7I2 | Ataxin-7-like protein 1 OS=Mus musculus GN=Atxn7l1 PE=1 SV=1 - [D3Z7I2_MOUSE] | 1.538 | 1.124 | 1.441 | 1.052 |
| B1AR51 | Dynein, axonemal, heavy chain 9 OS=Mus musculus GN=Dnah9 PE=4 SV=1 - [B1AR51_MOUSE] | 1.597 | 1.326 | 1.537 | 1.275 |
| D6RJ84 | Uridine-cytidine kinase OS=Mus musculus GN=Uckl1 PE=3 SV=1 - [D6RJ84_MOUSE] | 1.612 | 1.687 | 1.448 | 1.484 |
| Q8C419 | Probable G-protein coupled receptor 158 OS=Mus musculus GN=Gpr158 PE=1 SV=2 - [GP158_MOUSE] | 1.624 | 1.573 | 1.581 | 1.531 |
| Q8BP18 | Protein Zfp101 OS=Mus musculus GN=Zfp101 PE=2 SV=1 - [Q8BP18_MOUSE] | 1.629 | 1.531 | 1.620 | 1.521 |
| P27784 | C-C motif chemokine 6 OS=Mus musculus GN=Ccl6 PE=1 SV=1 - [CCL6_MOUSE] | 1.648 | 1.129 | 1.524 | 1.043 |
| P63254 | Cysteine-rich protein 1 OS=Mus musculus GN=Crip1 PE=1 SV=2 - [CRIP1_MOUSE] | 1.669 | 1.643 | 1.744 | 1.765 |
| Q91Z53 | Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1 - [GRHPR_MOUSE] | 1.707 | 0.774 | 1.815 | 0.822 |
| A2BGH0 | BPI fold-containing family B member 4 OS=Mus musculus GN=Bpifb4 PE=2 SV=1 - [BPIB4_MOUSE] | 1.709 | 1.927 | 1.884 | 2.123 |
| P20065-2 | Isoform Short of Thymosin beta-4 OS=Mus musculus GN=Tmsb4x - [TYB4_MOUSE] | 1.730 | 1.679 | 1.529 | 1.537 |
| D3Z7R7 | Minor histocompatibility protein HA-1 OS=Mus musculus GN=Hmha1 PE=1 SV=1 - [D3Z7R7_MOUSE] | 1.756 | 0.829 | 1.687 | 0.796 |
| Q059P4 | Filamin A interacting protein 1 OS=Mus musculus GN=Filip1 PE=2 SV=1 - [Q059P4_MOUSE] | 1.772 | 1.485 | 1.839 | 1.540 |
| H7BWZ9 | Protein dopey-1 OS=Mus musculus GN=Dopey1 PE=4 SV=1 - [H7BWZ9_MOUSE] | 1.816 | 2.073 | 1.625 | 1.854 |
| B1AY85 | Plexin domain-containing protein 2 OS=Mus musculus GN=Plxdc2 PE=4 SV=1 - [B1AY85_MOUSE] | 1.822 | 1.870 | 1.991 | 2.042 |
| E9QKG2 | Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1 - [E9QKG2_MOUSE] | 1.872 | 1.514 | 2.014 | 1.628 |
| O35639 | Annexin A3 OS=Mus musculus GN=Anxa3 PE=1 SV=4 - [ANXA3_MOUSE] | 1.927 | 1.916 | 1.822 | 1.826 |
| Q91XV3 | Brain acid soluble protein 1 OS=Mus musculus GN=Basp1 PE=1 SV=3 - [BASP1_MOUSE] | 1.972 | 1.737 | 1.870 | 1.656 |
| P08249 | Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3 - [MDHM_MOUSE] | 2.087 | 2.076 | 1.950 | 1.932 |
| Q8BIG7 | Catechol O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1 - [CMTD1_MOUSE] | 2.211 | 1.021 | 1.104 | 0.764 |
| P70695 | Fructose-1,6-bisphosphatase isozyme 2 OS=Mus musculus GN=Fbp2 PE=2 SV=2 - [F16P2_MOUSE] | 2.560 | 2.264 | 2.149 | 1.899 |
| Q61176 | Arginase-1 OS=Mus musculus GN=Arg1 PE=1 SV=1 - [ARGI1_MOUSE] | 2.938 | 3.026 | 2.877 | 2.891 |
| Q8K3H0 | DCC-interacting protein 13-alpha OS=Mus musculus GN=Appl1 PE=1 SV=1 - [DP13A_MOUSE] | 4.298 | 1.034 | 1.669 | 0.401 |
| Q8R0W0 | Epiplakin OS=Mus musculus GN=Eppk1 PE=1 SV=2 - [EPIPL_MOUSE] | 4.557 | 3.937 | 3.681 | 3.179 |
| S4R1P5 | Dystonin OS=Mus musculus GN=Dst PE=1 SV=1 - [S4R1P5_MOUSE] | 5.939 | 5.118 | 4.314 | 3.616 |