Table 2. Assignment of the Arctic metagenomic reads to individual chromosomes of B. prasinos Ban7 and associated statistics.
Ref names | Ref length (bp) | # Reads | Alignment (%) | Depth cover | % ID | % GC |
---|---|---|---|---|---|---|
chrom_01 | 1 352 724 | 155 626 | 97.6 | 10.7 | 92.9 | 49.3 |
chrom_02 | 1 122 692 | 127 118 | 97.2 | 10.5 | 92.8 | 49 |
chrom_03 | 1 091 008 | 123 431 | 96.3 | 10.6 | 92.9 | 49.2 |
chrom_04 | 1 037 991 | 122 919 | 97 | 11 | 92.5 | 48.5 |
chrom_05 | 1 019 276 | 114 827 | 96.5 | 10.5 | 92.8 | 48.9 |
chrom_06 | 989 707 | 110 283 | 96.2 | 10.4 | 92.8 | 48.8 |
chrom_07 | 955 652 | 108 599 | 96.3 | 10.6 | 92.9 | 48.9 |
chrom_08 | 937 610 | 104 766 | 95.7 | 10.4 | 92.9 | 49 |
chrom_09 | 895 536 | 101 602 | 96.7 | 10.6 | 92.9 | 49 |
chrom_10 | 794 368 | 86 786 | 95.1 | 10.2 | 92.8 | 48.9 |
chrom_11 | 741 603 | 108 169 | 96.5 | 13.1 | 93.2 | 48.7 |
chrom_12 | 712 459 | 79 697 | 96.3 | 10.4 | 92.8 | 48.9 |
chrom_13 | 708 035 | 83 561 | 96.8 | 11 | 92.6 | 49 |
chrom_14 | 663 424 | 59 280 | 96.5 | 8.4 | 93 | 43.6 |
chrom_15 | 519 835 | 58 731 | 96.6 | 10.5 | 92.8 | 48.8 |
chrom_16 | 494 108 | 53 034 | 93.2 | 9.9 | 92.8 | 48.7 |
chrom_17 | 465 570 | 46 946 | 91.3 | 9.3 | 92.7 | 48.4 |
chrom_18 | 310 170 | 32 728 | 95.4 | 9.6 | 92.6 | 47.7 |
chrom_19 | 146 238 | 3740 | 41.9 | 2.2 | 92.1 | 42.4 |
Mito | 43 614 | 21 546 | 100 | 39.6 | 95.5 | 45.5 |
Chloro | 72 700 | 40 406 | 69.2 | 45.8 | 96.6 | 46.3 |
Reference names (Ref Names) lists the individual chromosomes (1 to 19), the mitochondria (Mito) and chloroplast (Chloro). Reference length (Ref Length) is the length of the reference sequences for the chromosomes in base pair (bp). Number of reads (# Reads) mapped to the reference sequence. Alignment is the percentage of the chromosome length with aligned reads. Depth of coverage (Depth Cover) is average number of reads aligning to a given position of the reference chromosome. Percent identity (% ID) is average pairwise identity over the alignment and the percent GC (%GC) is GC content of mapped Arctic reads.