Table 3.
Comparison of novel In1059 with other integrons in the study
| Integron | In1059 | In846 | In843 | In37 | In62 | In1021 |
|---|---|---|---|---|---|---|
| Pc variant | PcH1 | PcH1 | None | None | PcH1 | PcH1 |
| “-35”: tggaca | “-35”: tggaca | “-35”: tggaca | “-35”: ggacat | |||
| “-35”: taaact | “-10”: taaact | “-10”: ttcgta | “-10”: taaact | |||
| P2 promoter | Absent | Absent | Absent | Absent | Absent | Absent |
| PintI1 | Yes | Yes | Yes | Yes | Yes | Yes |
| “-10”: agtcta | “-10”: agtcta | “-10”: agggcg | “-10”: agtcta | “-10”: agtcta | “-10”: agtcta | |
| “-35”: cagcaa | “-35”: cagcaa | “-35”: catcgt | “-35”: cagcaa | “-35”: cagca | “-35”: cagcaa | |
| 19 bp ORF11 duplication | No | No | No | No | No | No |
| intI1 | IntI1 R32_H39 | IntI1 R32_H39 | Remant of intI1 | Remant of intI1 | IntI1 R32_H39 | IntI1 R32_H39 |
| 1010 bp-length | 1014 bp-length | 4 bp-length | 720 bp-length | 1014 bp-length | 1014 bp-length | |
| attI1 | 63 bp-length | 63 bp-length | 63 bp-length | 63 bp-length | 63 bp-length | 63 bp-length |
| Array of gene cassettes | GCbla
VIM-5 - GCaacA4’-37- (tniC-aadA16)- (qacE 30-aadB) |
GCbla
VIM-1 - GCaacA4cr- (qacE 101-catB3) - GCarr-3 |
GCaacA4cr - GCarr-3 - GCdfrA27 - (qacE 101-aadA16Δ::IS26) |
GCaacA4cr - GCbla OXA-1 - GCcatB3 - GCarr-3 |
GCaacA4cr | GCaacA4cr - (qacE 109-arr-3) - GCdfrA27 - (qacE 30-aadA16) |
| attC |
attCbla
VIM-5(L;R) attC aacA4Δ(LΔ; R); attC aadA16/aacA4(L;R); attC aadBΔ(L; Del) |
attCbla
VIM-1(L;R); attC aacA4cr(L;R); attC catB3 (L;R); attC aacA4(LΔ; R) |
attC
aacA4cr (L; R); attC arr-3 (L;R); attC dfrA27 (L;R); attC aadA16 (L;R) |
attC
aacA4cr (L;R); attCbla OXA-1(L;R); attC catB3 (L;R); attC arr-3 (L; R) |
attC aacA4cr (L; R) |
attC
aacA4cr (L;R); attC arr-3 (L; R); attC dfrA27 (L; R); attC aadA16(L;R) mutated |
| 3′-CS | qacEΔ1-sul1 | qacEΔ1 (partial) | qacEΔ1 (partial) | qacEΔ1-sul1 | qacEΔ1-sul1 | IS15-sul1Δ-IS1 |
Abbreviations: attC (L; R) left- and right-hand parts of attC in gene cassettes, attC (LΔ; R) truncated left- and normal right- hand parts of attC in gene cassettes, attC (L; Del) normal left- and deleted right-hand parts of attC in gene cassettes, suggesting no functional gene cassette, attC (L; R) mutated mutated left- and mutated right-hand parts of attC in gene cassettes, GC abbreviation of gene cassette