Fig. 2.

Performance of OrthoFiller on S. cerevisiae genome with 10% of annotated genes removed. a Using OrthoFiller an average of 158 of 160 found genes (99.0%) had genomic locations matching any of the 513 deleted genes. In the absence of OrthoFiller filtration an average of 447 of 582 (79.2%) of the found genes matched any of the deleted genes. b Boxplot of protein F-scores for genes predicted using OrthoFiller, versus predictions made in the absence of OrthoFiller filtration, that had a protein F-score of ≤0.95. c Density plot showing the protein and orthogroup F-scores for all recovered genes using OrthoFiller. d Density plot showing the protein and orthogroup F-scores for all recovered genes in the absence of OrthoFiller filtration