Table 9.
SRA RNA-seq data coverage for novel genes in fungal genomes
| Species | SRA ID | Instrument/details | Genes in original annotation | Novel genes | ||||
|---|---|---|---|---|---|---|---|---|
| Total | W/ reads | % | Total | W/ reads | % | |||
| E. gossypii | N/A a | N/A | 4768 | N/A | N/A | 2 | N/A | N/A |
| D. hansenii | SRR1296968 | Illumina HiSeq 2000, paired end | 5781 | 6272 | 92.2% | 13 | 13 | 100% |
| K. lactis | SRR1200528 | Illumina Genome Analyzer II, single | 5075 | 5076 | 100% | 8 | 8 | 100% |
| S. cerevisiae | SRR539284 | Illumina HiSeq 2000, paired end | 6560 | 6572 | 99.8% | 2 | 2 | 100% |
| Y. lipolytica | SRR868669 | Illumina HiSeq 2000, single | 6432 | 6447 | 99.8% | 9 | 9 | 100% |
aNo publically available data found for this species/strain