Table 2. Number of SNPs sequenced and used for final prediction.

Sample	Total informative SNPs	Sequenced SNPs (% total)	SNPs used for final prediction (% total)
1	133	69 (51.9%)	44 (33.1%)
2	121	58 (47.9%)	27 (22.3%)
3	124	60 (48.4%)	26 (21.0%)
4	107	57 (53.3%)	18 (16.8%)
5	109	58 (53.2%)	31 (28.4%)
6	96	58 (60.4%)	34 (35.4%)
7	89	55 (61.8%)	34 (38.2%)
8	125	66 (52.8%)	45 (36.0%)
9	116	76 (65.5%)	37 (31.9%)
10	136	75 (55.1%)	34 (25.0%)
11	134	61 (45.5%)	24 (17.9%)
12	165	80 (48.5%)	38 (23.0%)
13	109	58 (53.2%)	27 (24.8%)
14	137	64 (46.7%)	48 (35.0%)
15	40	13 (32.5%)	12 (30.0%)
16	126	66 (52.4%)	36 (28.6%)
17	143	69 (48.3%)	38 (26.6%)
18	132	67 (50.8%)	27 (20.5%)
19	94	50 (53.2%)	33 (35.1%)
20	100	44 (44.0%)	32 (32.0%)
21	111	61 (55.0%)	30 (27.0%)
22	113	45 (39.8%)	19 (16.8%)
23	105	56 (53.3%)	38 (36.2%)
24	136	67 (49.3%)	37 (27.2%)
25	72	47 (65.3%)	26 (36.1%)
26	109	56 (51.4%)	25 (22.9%)
27	111	58 (52.3%)	26 (23.4%)
28	95	56 (58.9%)	10 (10.5%)
29	137	81 (59.1%)	21 (15.3%)
30	138	86 (62.3%)	37 (26.8%)
31	125	58 (46.4%)	0
32	53	44 (83%)	0
33	107	56 (52.3%)	0
34	48	23 (48%)	0
35	112	57 (50.9%)	0
36	59	29 (49.2%)	0
37	111	54 (48.6%)	0

Abbreviation: SNP, single-nucleotide polymorphism.