Table 3. Number of SNPs used for parental haplotype prediction.

Sample	Paternal SNPs (% sequenced)	Maternal SNPs (% sequenced)	Excluded SNPs (% sequenced)
1	32 (46.4%)	12 (17.4%)	25 (36.2%)
2	11 (19.0%)	16 (27.6%)	31 (53.4%)
3	1 (1.7%)	25 (41.7%)	34 (56.7%)
4	3 (5.3%)	15 (26.3%)	39 (68.4%)
5	5 (8.6%)	26 (44.8%)	27 (46.6%)
6	14 (24.1%)	20 (34.5%)	24 (41.4%)
7	7 (12.7%)	27 (49.1%)	21 (38.2%)
8	30 (45.5%)	15 (22.7%)	21 (31.8%)
9	26 (34.2%)	11 (14.5%)	39 (51.3%)
10	15 (20.0%)	19 (25.3%)	41 (54.7%)
11	10 (16.4%)	14 (23.0%)	37 (60.7%)
12	17 (21.3%)	21 (26.3%)	42 (52.5%)
13	10 (17.2%)	17 (29.3%)	31 (53.4%)
14	34 (53.1%)	14 (21.9%)	16 (25.0%)
15	11 (84.6%)	1 (7.7%)	1 (7.7%)
16	26 (39.4%)	10 (15.2%)	30 (45.5%)
17	15 (21.7%)	23 (33.3%)	31 (44.9%)
18	7 (10.4%)	20 (29.9%)	40 (59.7%)
19	7 (14.0%)	26 (52.0%)	17 (34.0%)
20	29 (65.9%)	3 (6.8%)	12 (27.3%)
21	13 (21.3%)	17 (27.9%)	31 (50.8%)
22	3 (6.7%)	16 (35.6%)	26 (57.8%)
23	12 (21.4%)	26 (46.4%)	18 (32.1%)
24	4 (6.0%)	33 (49.3%)	30 (44.8%)
25	5 (10.6%)	21 (44.7%)	21(44.7%)
26	7 (12.5%)	18 (32.1%)	31 (55.4%)
27	18 (31.0%)	8 (13.8%)	32 (55.2%)
28	2 (3.6%)	8 (14.3%)	46 (82.1%)
29	9 (11.1%)	12 (14.8%)	60 (74.1%)
30	12 (14.0%)	25 (29.1%)	49 (57.0%)

Abbreviation: SNP, single-nucleotide polymorphism.