Table 2. Run time, in seconds, for GERMLINE, FISHR (including both GERMLINE and FISHR subroutines), HaploScore (including both GERMLINE and HaploScore subroutines), and rIBD in simulated chromosomes that averaged 16 cM in length with 1185 SNPs, for varying sample sizes.

	GERMLINE	FISHR			HaploScore			rIBD
Sample Size	Total	GERMLINE	FISHR	Total	GERMLINE	HaploScore	Total	Total
500	1.67	2.67	1.19	3.85	1.67	530.69	368.02	187.48
1000	6.13	10.67	3.81	14.48	21.00	1468.72	1475.39	1405.56
2000	23.78	42.67	15.55	58.22	25.67	5800.98	5826.65	17 258.32
4000	92.31	167.00	58.56	225.56	104.33	23 029.38	23 133.71	397 238.55
8000	379.75	677.00	235.82	912.82	1382.67	95 231.45	95 650.45	a

^aProgram ran for 1 month (~2 500 000 s) before the server went offline for routine maintenance.