Table 1. Genome statistics and selected metabolic features encoded in available (meta)genomes of Woeseiaceae/JTB255.
(Meta)genome name | SAG 1868_B | bin 20_j1 | bin JSS_woes1 | bin WOR_SG8_31a | Woeseia oceanib |
---|---|---|---|---|---|
Accession | IMG genome ID 2651869504 | IMG genome ID 2651869885 | IMG genome ID 2695420981 | Genbank LJTI00000000 | Genbank (NZ_CP016268) |
Sample origin | Tidal sediment Janssand/GER | Tidal sediment Janssand/GER | Tidal sediment Janssand/GER | Estuarine sediment WOR/USA | Coastal sediment Xiaoshi Island/CN |
Genome statistics | |||||
Assembly size (bp) | 2 277 554 | 2 404 210 | 8 121 065 | 5 968 366 | 4 059 891 |
GC (%) | 59.9 | 56.5 | 57.8 | 62.6 | 57.8 |
Predicted genes (IMG gene calling) | 2333 | 2424 | 9718c | 5821 | 3646 |
Scaffolds | 358 | 298 | 607 | 266 | 1 |
N50 | 22 940 | 20 713 | 17 507 | 37 817 | — |
Marker gene completeness (%) | 48.3 | 48.4 | (92.5d) | 100a | 100 |
tRNAs | 26 | 25 | 54 | 68 | 45 |
rRNAs | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S | 5S, 16S, 23S |
Metabolism | |||||
Autotrophic carbon fixation | − | − | Rubisco II, PRK | Rubisco I, PRK | − |
Dissimilatory sulfur oxidation | SoxABCDHXYZ | SoxABCDXYZ | AprAB | SoxABCDHWXYZ | — |
Group 1d [NiFe] uptake hydrogenase | + | − | + | + | − |
Cytochrome c oxidase (O2 respiration) | + | + | + | + | + |
Denitrification | NirS, NorB | NorB | NirS, NorB | NirS, NorB | NirS, NorB |
Glycosyl hydrolases (families) | 22 (6) | 20 (7) | 54 (17) | 13 (6) | 19 (9)e |
Glycosyl hydrolases per Mbp | 10 | 8 | 7 | 2 | 5 |
Peptidases (S=serine; M=metallo) | 114 (S:40, M: 44) | 119 (S:43, M: 40) | 486 (S:170, M: 205) | 262 (S:97, M: 94) | 222 (S: 82, M: 85) |
Peptidases per Mbp | 50 | 50 | 60 | 44 | 55 |
Peptidase/glycosyl hydrolase per Mbp | 5 | 6.3 | 8.6 | 22 | 11 |
Abbreviation: PRK, phosphoribulokinase.
For details see Baker et al., 2015.
RAST gene calling (see Supplementary Information).
Includes a 2.2 × duplication of single copy genes.
Available at www.cazy.org