Table 1. General features of the MG-III bins and the composite genomes CG-MGIII.
| MG-III bin | No. of contigs | %GC±s.d. | No. of Mb | % Genome (1) (2) (3)a | No. of genomes | Largest contig (Kb) | No. of CDS/nr CDSb | Intergenic region (bp) | Median gene size (bp) | CheckMc % contamination |
|---|---|---|---|---|---|---|---|---|---|---|
| Epi1 | 136 | 36.6±0.9 | 2.95 | 80.0/35.1/83.0 | 2 | 120.8 | 3058/1307 | 42 | 752 | — |
| CG-Epi1 | 25 | 36.6±0.8 | 1.18 | 85.7/34.2/84.9 | 1 | 135.9 | —/1106 | 40 | 792 | 2 |
| Epi2A | 34 | 36.0±0.9 | 0.54 | 54.3/16.2/45.3 | 1 | 27.4 | 519/— | 41 | 765 | — |
| Epi2B | 26 | 36.2±0.9 | 0.56 | 57.1/18.0/54.7 | 1 | 79.1 | 525/— | 40 | 768 | — |
| Epi2C | 10 | 36.1±0.9 | 0.31 | 5.7/4.5/5.7 | 1 | 92.8 | 282/— | 40 | 807 | — |
| CG-Epi2 | 43 | 36.1±1.1 | 1.22 | 80.0/30.6/75.5 | 1 | 101.9 | —/1182 | 42 | 777 | 25 |
| Epi3 | 35 | 35.9±1.2 | 0.71 | 48.6/19.8/45.3 | 1 | 55.8 | 675/673 | 37 | 798 | — |
| CG-Epi3 | 30 | 35.9±1.2 | 0.79 | 62.9/24.3/62.3 | 1 | 71.7 | —/741 | 40 | 786 | 0.8 |
| Epi4 | 31 | 36.5±0.8 | 0.66 | 34.3/15.3/39.6 | 1 | 47.2 | 612/610 | 37 | 794 | — |
| CG-Epi4 | 24 | 36.4±0.7 | 0.71 | 34.3/16.2/43.4 | 1 | 80 | —/666 | 37 | 786 | 0 |
| Epi5 | 18 | 36.1±0.8 | 0.26 | 2.9/3.6/7.6 | 1 | 23.4 | 242/221 | 36 | 767 | — |
| CG-Epi5 | 22 | 36.3±0.8 | 0.39 | 2.9/4.5/9.4 | 1 | 47.6 | —/370 | 38 | 804 | 0 |
| Epi6 | 26 | 36.6±0.9 | 0.88 | 51.4/15.3/54.7 | 1 | 111.1 | 854/594 | 47 | 705 | — |
| CG-Epi6 | 26 | 36.3±1.1 | 0.54 | 57.1/21.6/60.4 | 1 | 50.3 | —/542 | 47 | 714 | 1.6 |
| Bathy1 | 39 | 36.9±0.9 | 1.2 | 54.3/23.4/60.4 | 1 | 94.7 | 1143/1007 | 46 | 807 | — |
| CG-Bathy1 | 22 | 37.5±1.8 | 1.04 | 60.0/26.1/64.2 | 1 | 211.7 | —/988 | 46 | 792 | 4.8 |
| Bathy2 | 37 | 64.6±1.8 | 1.06 | 68.6/18.9/58.5 | 1 | 41.7 | 1023/654 | 40 | 771 | — |
| CG-Bathy2 | 18 | 64.4±1.5 | 0.77 | 68.6/21.6/58.5 | 1 | 130.1 | —/704 | 41 | 816 | 2.4 |
Abbreviations: CDS, Coding DNA sequence; nr-CDS, non-redundant CDS.
a
(1) Raes et al. (2007); (2) Albertsen et al. (2013); (3) Narasingarao et al. (2012).
b
nr-CDS: non-redundant CDS clustered at 80% similarity and 70% coverage.