Table 4.
Characteristics of the predicted protein-coding genes in the Sogatella furcifera assembly
| Gene | Coding DNA sequence |
Exon | Exon | Intron | |||
|---|---|---|---|---|---|---|---|
| Gene set | Number | length (bp) | sequence length (bp) | per gene | length (bp) | length (bp) | |
| De novo | AUGUSTUS | 44 600 | 10 406.51 | 1507 | 6.04 | 249 | 1659.97 |
| GENSCAN | 44 160 | 9280.96 | 1106 | 4.25 | 260 | 1505.23 | |
| GeneWise: | |||||||
| Homolog | Bombyx mori | 11 687 | 4890.78 | 771 | 2.87 | 268 | 2197.30 |
| D. melanogaster | 19 671 | 6574.52 | 884 | 3.44 | 257 | 2328.74 | |
| Apis mellifera | 18 160 | 8437.51 | 1000 | 4.08 | 244 | 2411.35 | |
| Acyrthosiphon pisum | 55 250 | 1414.84 | 865 | 1.27 | 681 | 2032.34 | |
| Rhodnius prolixus | 29 842 | 4534.72 | 775 | 2.82 | 274 | 2054.77 | |
| Tribolium castaneum | 33 096 | 4704.18 | 925 | 2.63 | 351 | 2315.42 | |
| Pediculus humanus | 17 785 | 7868.22 | 986 | 4.01 | 245 | 2282.51 | |
| RNA-Seq | 28 183 | 4049.83 | 1800 | 3.33 | 540 | 2504.86 | |
| EVidenceModeler | 21 254 | 12 584.24 | 1577 | 6.47 | 243 | 2011.27 | |