Parameter name | Value | Comment |
---|---|---|
ε | 0.06 mM min−1 | Basal H2O2 production rate in the absence of external H2O2
Determined by a fitting procedure to data in Figure 6. |
α | 1 min−1 | H2O2 transport rate across cell membrane. Taken from Figure 1—figure supplement 1C. |
β | 10 mM−1 min−1 | H2O2 scavenging rate. Derived from the absolute adaptation concentration Iabs in Figure 3. |
γ | 0.1 mM−1 min−1 | Antioxidant transcription rate. Derived from the absolute adaptation concentration Iabs in Figure 3. |
μ | μ=log(2)/40 min−1 | Antioxidant mRNA decay rate. See the linear model above for the determination of parameter value. |
γ’ | 0.005 mM−1 min−1 | Antioxidant translation rate. Derived from the absolute adaptation concentration Iabs in Figure 3. |
μ’ | log(2)/100 min−1 | Antioxidant protein decay rate. Tsa1 is a stable protein, therefore, the decay is due to the dilution rate set by cell growth (doubling time ~ 100 min). |
K | 0.01 mM | Order of magnitude of internal H2O2 at which antioxidant. transcription saturates. Taken from Figure 6—figure supplement 1C. |
W | 0.01 mM | Order of magnitude of internal H2O2 at which H2O2 scavenging rate saturates. The ratio K/W ~ 1 gave the best fit to curves in Figure 6, hence the order of magnitude of this parameter. |