Table 1.
Peak | Relative height |
Fully sampledb |
Randomc | T2 weightedc |
Sine-weigthed poisson gapc | ||
---|---|---|---|---|---|---|---|
θ: 0–π/2 | θ: 0–π | no wt | |||||
RMSD in peak position (Hz) | |||||||
1 | 1.0 | 0.720 | 0.753 | 0.984 | 2.236 | 1.051 | 0.809 |
2 | 1.6 | 0.418 | 0.488 | 0.615 | 1.798 | 0.613 | 0.542 |
3d | 2.7 | 2.491 | 0.535 | 1.059 | 2.083 | 1.233 | 0.891 |
4 | 4.3 | 0.163 | 0.203 | 0.306 | 0.868 | 0.263 | 0.252 |
5 | 7.0 | 0.109 | 0.140 | 0.200 | 0.558 | 0.171 | 0.166 |
6 | 11.4 | 0.074 | 0.095 | 0.128 | 0.325 | 0.117 | 0.112 |
7 | 18.6 | 0.052 | 0.067 | 0.090 | 0.223 | 0.069 | 0.084 |
8 | 30.2 | 0.048 | 0.054 | 0.072 | 0.166 | 0.053 | 0.058 |
9 | 49.2 | 0.043 | 0.049 | 0.065 | 0.134 | 0.040 | 0.051 |
10 | 80.0 | 0.008 | 0.032 | 0.061 | 0.102 | 0.029 | 0.037 |
RMSD in peak width (Hz) | |||||||
1 | 1.0 | 0.915 | 1.024 | 1.096 | 1.162 | 0.940 | 1.091 |
2 | 1.6 | 0.534 | 0.742 | 0.876 | 1.129 | 0.664 | 0.801 |
3d | 2.7 | 1.378 | 0.737 | 1.856 | 2.519 | 2.110 | 1.125 |
4 | 4.3 | 0.197 | 0.418 | 0.531 | 0.879 | 0.310 | 0.468 |
5 | 7.0 | 0.128 | 0.311 | 0.420 | 0.717 | 0.209 | 0.341 |
6 | 11.4 | 0.075 | 0.227 | 0.313 | 0.506 | 0.140 | 0.253 |
7 | 18.6 | 0.046 | 0.159 | 0.235 | 0.409 | 0.093 | 0.178 |
8 | 30.2 | 0.029 | 0.123 | 0.165 | 0.300 | 0.074 | 0.126 |
9 | 49.2 | 0.018 | 0.100 | 0.145 | 0.216 | 0.052 | 0.118 |
10 | 80.0 | 0.011 | 0.089 | 0.159 | 0.176 | 0.048 | 0.109 |
RMSD in peak height relative to reference height (%) | |||||||
1 | 1.0 | 14.0 | 16.9 | 18.7 | 33.1 | 18.2 | 17.5 |
2 | 1.6 | 9.1 | 13.6 | 14.2 | 26.1 | 14.3 | 14.0 |
3d | 2.7 | 5.3 | 7.2 | 7.5 | 12.3 | 11.4 | 6.8 |
4 | 4.3 | 3.5 | 5.8 | 7.0 | 15.4 | 7.4 | 6.3 |
5 | 7.0 | 2.1 | 3.8 | 5.1 | 11.7 | 4.9 | 4.0 |
6 | 11.4 | 1.3 | 2.5 | 3.5 | 8.2 | 3.1 | 2.9 |
7 | 18.6 | 0.8 | 1.6 | 2.5 | 6.3 | 2.2 | 1.7 |
8 | 30.2 | 0.5 | 1.2 | 1.9 | 4.6 | 1.5 | 1.2 |
9 | 49.2 | 0.5 | 0.9 | 1.6 | 3.2 | 1.1 | 1.1 |
10 | 80.0 | 0.2 | 0.6 | 1.1 | 2.0 | 0.6 | 0.7 |
Average deviation in peak height relative to reference height (%) | |||||||
1 | 1.0 | 2.5 | −3.3 | −1.1 | 17.0 | −1.3 | −4.0 |
2 | 1.6 | 0.3 | −4.5 | −3.7 | 6.8 | −3.9 | −4.8 |
3d | 2.7 | −0.3 | −1.1 | −1.9 | −3.9 | −6.1 | −1.7 |
4 | 4.3 | −0.2 | −2.0 | −2.1 | −2.4 | −3.0 | −2.1 |
5 | 7.0 | 0.1 | −1.5 | −1.7 | −3.8 | −2.4 | −1.1 |
6 | 11.4 | 0.1 | −1.0 | −1.1 | −3.7 | −1.5 | −0.8 |
7 | 18.6 | −0.2 | −0.6 | −0.7 | −3.0 | −1.1 | −0.3 |
8 | 30.2 | 0.0 | −0.2 | −0.3 | −1.7 | −0.8 | −0.1 |
9 | 49.2 | −0.4 | −0.0 | 0.0 | −0.8 | −0.5 | 0.1 |
10 | 80.0 | 0.0 | −0.0 | 0.0 | −0.0 | −0.0 | 0.0 |
Missing peaks | 0.1% | 0.7% | 0.5% | 1.4% | 0.9% | 1.0% |
The time domain input data can be downloaded from http://spin.niddk.nih.gov/bax/software/SMILE, and all the scripts used for the simulation and reconstructions are included as Supplementary Material
Simulated fully sampled data set (t1 = 94.8 ms) with the peak intensity scaled down by √10 and the deviations calculated from the data sets with and without the RMS noise added
Compared to the 142.2 ms (50% longer t1) fully sampled noise-free data to match the 50% extended acquisition time in the F1 dimension of the final SMILE spectra. Poisson gap sampling schemes as defined by (Hyberts et al. 2010). T2-weighted exponential sampling scheme using the NUS sampler provided in MddNMR (Orekhov and Jaravine 2011)
This peak was always placed 23 Hz away from the strongest peak (#10)