Table 2. Summary of the transcriptome annotation compared with the reference genome of C. Sinensis (Xu et al., 2013).
Statistics libraries | T1 | T2 | T3 | |||
---|---|---|---|---|---|---|
Number | Percentage | Number | Percentage | Number | Percentage | |
Total reads | 52,806,514 | 100.0% | 58,326,252 | 100.0% | 57,213,736 | 100.0% |
Mapped reads | 44,664,047 | 84.58% | 49,507,338 | 84.88% | 48,492,905 | 84.76% |
Unique mapped reads | 43,386,022 | 97.14% | 48,146,871 | 97.25% | 47,129,445 | 97.19% |
Multiple mapped reads | 1,278,025 | 2.86% | 1,360,467 | 2.75% | 1,363,460 | 2.81% |
Pair mapped reads | 39,251,294 | 87.88% | 43,459,426 | 87.78% | 42,663,447 | 87.98% |
Single mapped reads | 4,574,673 | 10.24% | 5,159,966 | 10.42% | 4,969,429 | 10.25% |
Notes.
- T1
- HWWZSTJ (320 DAF)
- T2
- WZSTJ (275 DAF)
- T3
- HWWZSTJ (275 DAF)