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. 2017 May 18;5:e3343. doi: 10.7717/peerj.3343

Table 3. Analyses of differentially expressed transcripts based on KEGG pathway.

# Pathway DEGs with pathway annotation (283) All genes with pathway annotation (3516) p_value corr_p_ value Pathway ID
T1 vs T3 1 Phenylpropanoid biosynthesis 24 (8.48%) 82 (2.33%) 9.58e−09 8.71e−07 ko00940
2 Photosynthesis 14 (4.95%) 46 (1.31%) 7.90e−06 7.19e−04 ko00195
3 Plant-pathogen interaction 26 (9.19%) 130 (3.7%) 8.30e−06 7.56e−04 ko04626
4 Plant hormone signal transduction 31 (10.95%) 180 (5.12%) 2.73e−05 2.49e−03 ko04075
5 Phenylalanine metabolism 17 (6.01%) 72 (2.05%) 3.59e−05 3.26e−03 ko00360
6 Photosynthesis-antenna proteins 7 (2.47%) 15 (0.43%) 7.45e−05 6.78e−03 ko00196
7 Galactose metabolism 10 (3.53%) 45 (1.28%) 2.46e−03 2.23e−01 ko00052
8 Starch and sucrose metabolism 21 (7.42%) 137 (3.9%) 2.66e−03 2.42e−01 ko00500
9 Porphyrin and chlorophyll metabolism 8 (2.83%) 37 (1.05%) 7.83e−03 7.12e−01 ko00860
10 Amino sugar and nucleotide sugar metabolism 14 (4.95%) 89 (2.53%) 1.06e−02 9.66e−01 ko00520
T2 vs T1 1 Photosynthesis 18 (5.17%) 46 (1.31%) 1.1384e−07 1.1384e−05 ko00195
2 Photosynthesis antenna proteins 10 (2.87%) 15 (0.43%) 1.5234e−07 1.5234e−05 ko00196
3 Plant-pathogen interaction 32 (9.2%) 130 (3.7%) 5.5471e−07 5.5471e−05 ko04626
4 Phenylpropanoid biosynthesis 22 (6.32%) 82 (2.33%) 7.9820e−06 7.9820e−04 ko00940
5 Cyanoamino acid metabolism 9 (2.59%) 22 (0.63%) 1.2713e−04 1.2713e−02 ko00460
6 Biosynthesis of unsaturated fatty acids 9 (2.59%) 29 (0.82%) 1.3656e−03 1.3656e−01 ko01040
7 Phenylalanine metabolism 16 (4.6%) 72 (2.05%) 1.3850e−03 1.3850e−01 ko00360
8 Flavonoid biosynthesis 10 (2.87%) 37 (1.05%) 2.3996e−03 2.3996e−01 ko00941
9 Starch and sucrose metabolism 23 (6.61%) 137 (3.9%) 7.1760e−03 7.1760e−01 ko00500
10 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5 (1.44%) 14 (0.4%) 8.6944e−03 8.6944e−01 ko00945
T2 vs T3 1 Photosynthesis 26 (10.48%) 46 (1.31%) 5.1027e−19 4.6434e−17 ko00195
2 Photosynthesis-antenna proteins 11 (4.44%) 15 (0.43%) 1.8431e−10 1.6772e−08 ko00196
3 Phenylpropanoid biosynthesis 24 (9.68%) 82 (2.33%) 6.3286e−10 5.7590e−08 ko00940
4 Phenylalanine metabolism 16 (6.45%) 72 (2.05%) 2.6448e−05 2.4068e−03 ko00360
5 Nitrogen metabolism 9 (3.63%) 32 (0.91%) 2.4845e−04 2.2609e−02 ko00910
6 Flavone and flavonol biosynthesis 6 (2.42%) 15 (0.43%) 3.3744e−04 3.0707e−02 ko00944
7 Cyanoamino acid metabolism 7 (2.82%) 22 (0.63%) 5.4299e−04 4.9412e−02 ko00460
8 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5 (2.02%) 14 (0.4%) 1.9788e−03 1.8007e−01 ko00945
9 Glyoxylate and dicarboxylate metabolism 7 (2.82%) 28 (0.8%) 2.6144e−03 2.3791e−01 ko00630
10 Flavonoid biosynthesis 8 (3.23%) 37 (1.05%) 3.5075e−03 3.1918e−01 ko00941
11 Porphyrin and chlorophyll metabolism 8 (3.23%) 37 (1.05%) 3.5075e−03 3.1918e−01 ko00860
12 Plant-pathogen interaction 18 (7.26%) 130 (3.7%) 3.9071e−03 3.5554e−01 ko04626