Table 2.
Bioinformatic analyses on XMRV.
| Genome | Acc no. producing hits with XMRV | %homology | %coverage | Region of the hit producing the homology | Annotation of the region |
|---|---|---|---|---|---|
| Mouse | NC_00079.6 (chr. 13 of strain C57BL/6J) | 93 | 99 | Multiple | ERV-K; various uncharacterized protein-coding loci |
| AC167466.6 (chr 7, clone RP24-220N8) | 94 | 99 | 7918-20742 | MIR, L1, RTLR4_MM | |
| AC121813 (chr 9, clone RP23-457E5) | 94 | 99 | 37845-45763 | ERV1 | |
| AC161413.5 (chr 19, clone RP23-106D17) | 94 | 99 | 30251-38177 | RTLR4_MM | |
| Human | AC084198,31 (chr 3, clone RP11454H13) | 67 | 10 | 39494-40066 | HERV-HC2 |
| NG_001019.6 (chr 14, IgH locus) | 68 | 18 | 3 matches of a 500-bp unit plus other minor matches | Intergenic region among V segments | |
| XR_945967 | 66 | 12 | 2888-3497; 4124-4692 | Long ncRNA | |
| AC078899.1 (chr 19, clone CTC-575C13) | 68 | 12 | 151757-152247; 153125-153501 | Located among Alu and LTR6 repeats | |
| AC073174.5 (chr 10, clone RP11-319F12) | 67 | 12 | 109485-110094; 1100856-111289 | Not annotated | |
Examples of hits produced by comparing XMRV (EF185282) genome against the BLAST human and murine genome pages.