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. 2017 Jun;18(3):227–235. doi: 10.2174/1389202917666161102095508

Table 1.

Some studies that have assessed the approximate size of cencRNAs in different organisms under distinct conditions.

Organism Originated From Size Observations Technical Approach References
Maize CentC centromeric satellite repeats 40 nt and 75 nt predominantly
∼75 nt
Untreated cells Northern blot [68]
Maize Centromeric retrotransposons (CRMs) and satellite repeats (CentC) ∼ 40 – 250 nt Enriched in CenH3-associated chromatin CenH3 immunoprecipi-tation followed by blot hybridization [69]
Chicken-human hybrid DT40 cell Alphoid (centromeric) and Satellite III (pericentromeric) - Smear spanning from ∼ 20nt to > 10 kb Dicer depletion Northern blot [48]
Tammar wallaby sat23, a centromere-specific repetitive satellite containing the CENP-B-binding domain ∼ 40 nt Untreated cells Northern blot [43]
Mouse Minor satellite (centromere) ∼ 2-4 kb
∼ 120 nt trancript accumulation
- Untreated cells
- Stress conditions, differentiation
Northern blot [70]
Human (HeLa cells) α-satellite (centromeric repeats) Discrete bands corresponding to multiples of the 171 nt monomer. Actynomicin-treated cells (unchanged abundance as compared to untreated control) PCR [71]
Human (HeLa cells) α-satellite (centromeric repeats) ∼1.3 kb Untreated cells Northern blot [15]
Human (HeLa cells) α-satellite (centromeric repeats) ∼171 bp Enriched in chromosome-associated RNA fraction Purification of chromosome-associated RNA fraction followed by Northern blot [72]