Table 1.
Organism | Originated From | Size | Observations | Technical Approach | References |
---|---|---|---|---|---|
Maize | CentC centromeric satellite repeats | 40 nt and 75 nt predominantly ∼75 nt |
Untreated cells | Northern blot | [68] |
Maize | Centromeric retrotransposons (CRMs) and satellite repeats (CentC) | ∼ 40 – 250 nt | Enriched in CenH3-associated chromatin | CenH3 immunoprecipi-tation followed by blot hybridization | [69] |
Chicken-human hybrid DT40 cell | Alphoid (centromeric) and Satellite III (pericentromeric) | - Smear spanning from ∼ 20nt to > 10 kb | Dicer depletion | Northern blot | [48] |
Tammar wallaby | sat23, a centromere-specific repetitive satellite containing the CENP-B-binding domain | ∼ 40 nt | Untreated cells | Northern blot | [43] |
Mouse | Minor satellite (centromere) | ∼ 2-4 kb ∼ 120 nt trancript accumulation |
- Untreated cells - Stress conditions, differentiation |
Northern blot | [70] |
Human (HeLa cells) | α-satellite (centromeric repeats) | Discrete bands corresponding to multiples of the 171 nt monomer. | Actynomicin-treated cells (unchanged abundance as compared to untreated control) | PCR | [71] |
Human (HeLa cells) | α-satellite (centromeric repeats) | ∼1.3 kb | Untreated cells | Northern blot | [15] |
Human (HeLa cells) | α-satellite (centromeric repeats) | ∼171 bp | Enriched in chromosome-associated RNA fraction | Purification of chromosome-associated RNA fraction followed by Northern blot | [72] |