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. Author manuscript; available in PMC: 2018 Jul 1.
Published in final edited form as: Mol Biochem Parasitol. 2016 Nov 22;215:11–22. doi: 10.1016/j.molbiopara.2016.11.003

Table 1.

Selected post-genomic studies of clade I nematodes [2].

Species Clade [4] Host Life stage(s) Platform / Method Accession Reference
mRNAs
Trichinella spiralis 2A Human, Swine newborn larvae, muscle larvae, adult Illumina Solexa GEO: GSE39151 [21]
newborn larvae, muscle larvae, adult Illumina HiSeq2000 GEO: GSE39328 [22]
Trichuris muris 2A Mouse L2, L3, adult female, adult male, female and male tissues Illumina HiSeq2000 AE: E-ERAD-125 [14]
Trichuris suis 2A Swine adult Illumina GAII n/a [31]
L1/L2, L3, L4, adult female, adult male, female and male tissues Illumina HiSeq2000 ENA: PRJNA208415 [15]
Trichuris trichiura 2A Human adult Ion Torrent Ion 318 ENA: PRJEB12315 [19]
Small RNAs
Trichinella spiralis 2A Human, Swine newborn larvae, muscle larvae, adult Illumina Solexa n/a [24]
L1 (muscle), adult Illumina MiSeq GEO: GSE56651 [23]
Trichuris suis 2A Swine L1/L2, L3, L4, adult female, adult male, adult female and male tissues Illumina GAII ENA: PRJNA208415 [15]
Methylation
Trichinella spiralis 2A Human, Swine newborn larvae, muscle larvae, adult Illumina HiSeq2000 GEO: GSE39328 [22]
Proteins
Trichinella spiralis 2A Human, Swine ESP from muscle larvae PB MALDI-TOF-TOF, MS/MS [27]
ESP from muscle larvae AB Sciex 4800 MALDI-TOF/TOF-MS [25]
surface protein from muscle larvae AB Sciex 4800 MALDI-TOF MS [28]
adult somatic proteins AB Sciex 4800 MALDI-TOF/TOF-MS [29]
surface protein from muscle and intestinal infective larvae n/a [30]
Trichuris trichiura 2A Human adult somatic extract W Micromass Q-TOF micro MS [18]

Abbreviations: Applied Biosystems (AB); European Bioinformatics Institute (EBI); EBI ArrayExpress (AE); EBI European Nucleotide Archive (ENA); excretory/secretory products (ESP); mass spectrometer (MS); matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF); National Center for Biotechnology Information (NCBI); NCBI Gene Expression Omnibus (GEO); PerSpective Biosystems (PB); Waters (W)