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. Author manuscript; available in PMC: 2018 Jul 1.
Published in final edited form as: Mol Biochem Parasitol. 2016 Nov 22;215:11–22. doi: 10.1016/j.molbiopara.2016.11.003

Table 2.

Selected post-genomic studies of clade III nematodes [2].

Species Clade [4] Host Life stage(s) Platform / Method Accession Reference
mRNAs
Anguillicola crassus 8A Eel L2, adult female, adult male Roche 454 GS FLX SRA: SRP010313 [64]
geographical isolates Illumina GAIIx SRA: SRP010313 [65]
Ascaris suum 8B Swine egg L3, liver L3, lung L3, L4, adult female, adult male Illumina HiSeq2000 SRA: SRP010159 [40]
adult male tissues Roche 454 n/a [38]
embryo, larvae, adult tissues Illumina GAII GEO: GSE26956 [35]
embryo, larvae, adult tissues Illumina GAII GEO: GSE38470 [37]
reproductive & non-reproductive adult tissues Illumina HiSeq2000 SRA: SRP013609 [39]
Brugia malayi 8B Human egg, microfilaria, L3, L4, adult female, adult male Illumina GAII AE: E-MTAB-811 [44]
intra-mosquito host Illumina GAII GEO: GSE53664 [45]
drug-treated adult female Illumina MiSeq SRA: SRP064921 [47]
Brugia pahangi 8B Canine, Feline microfilaria, L3 stages, L4, adult female, adult male Illumina HiSeq2000 ENA: ERP001375 WTSI
Dirofilaria immitis 8B Canine adult female, adult male Illumina GAIIx AE: E-MTAB-714 [52]
adult Illumina HiSeq2000 SRA: SRA048975 [53]
microfilaria, L3, L4, adult female, adult male Illumina GAII SRA: SRP048819 [56]
adult tissues Illumina GAII GEO: GSE67894 [54]
Litomosoides sigmodontis 8B Mouse microfilaria, adult female, adult male Roche 454 GS FLX SRA: ERA011678 [59]
Loa loa 8B Human n/a Illumina GAII BP: PRJNA60555 BI
Onchocerca flexuosa 8B Deer mixed stages Roche 454 GS FLX BP: PRJNA65265 [62]
Onchocerca volvulus 8B Human microfilaria, L2, L3, adult female Illumina HiSeq2000 ENA: ERP001350 WTSI
Toxocara canis 8B Canine, Human zoonosis L3, adult female, adult male, adult tissues Illumina GAII SRA: SRP051082 [43]
Small RNAs
Ascaris lumbricoides 8B Human miRNAs from parasitic adult Illumina Solexa n/a [36]
Ascaris suum 8B Swine miRNAs from parasitic adult Illumina Solexa n/a [36]
egg, early embryo, L1, L2, adult tissues Illumina GAII GEO: GSE26957 [35]
Brugia malayi 8B Human adult Illumina MiSeq GEO: GSE56651 [23]
Brugia pahangi 8B Canine, Feline L3, adult Illumina GAII SRA: SRP009892 [46]
Dirofilaria immitis 8B Canine adult Illumina Solexa GEO: GSE35646 [55]
Proteins
Ascaris suum 8B Swine ESP from egg L3, lung L3, L4 W ESI Q-TOF Premier MS [42]
ESP, perienteric and uterine fluids from adult female TF LTQ-Orbitrap Elite MS [41]
Brugia malayi 8B Human ESP from adult AB 4700 Proteomics Analyzer MS [48]
ESP from microfilaria, adult female, adult male W Micromass Q-TOF micro MS [66]
ESP from microfilaria, infective L3, molting L3, adult female, adult male linear ion trap-FT MS [49]
tissue from L3, adult female, adult male; blood-borne and uterine microfilaria linear ion trap–FT MS [50]
adult female tissues TFS LTQ-Orbitrap XL MS [51]
drug-treated adult female n/a [47]
Brugia pahangi 8B Canine, Feline adult somatic extracts AB Proteomics 4700 MALDI-TOF-TOF Analyzer MS [67]
Dirofilaria immitis 8B Canine ESP from adult TF LTQ-FT Ultra Mass MS [57]
adult somatic & surface antigens AB QSTAR-XL nanoESI-Q-TOF MS [58]
adult tissues TFS QExactive MS [54]
Litomosoides sigmodontis 8B Mouse ESP and tissue from adult female and adult male TFS LTQ-Orbitrap Velos MS [60]
Loa loa 8B Human urine from infected human TFS LTQ-Orbitrap Velos MS [61]
Onchocerca flexuosa 8B Deer adult lysates TFS LTQ Orbitrap Discovery hybrid MS [62]
Onchocerca ochengi 8B Bovine L3, adult female, adult male, uterine microfilaria TFS LTQ-Orbitrap Velos MS [63]

Abbreviations: Broad Institute (BI); European Bioinformatics Institute (EBI); EBI ArrayExpress (AE); EBI European Nucleotide Archive (ENA); excretory/secretory products (ESP); mass spectrometer (MS); matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF); National Center for Biotechnology Information (NCBI); NCBI BioProject (BP); NCBI Gene Expression Omnibus (GEO); NCBI Sequence Read Archive (SRA); Thermo-Fisher/ThermoFisher Scientific (TF/TFS); Waters (W); Wellcome Trust Sanger Institute (WTSI)