Table 3.
Selected post-genomic studies of clade IV nematodes [2].
| Species | Clade [4] | Host | Life stage(s) | Platform / Method | Accession | Reference |
|---|---|---|---|---|---|---|
| mRNAs | ||||||
| Strongyloides ratti | 10B | Rat | infective L3, free-living female, parasitic female | Illumina HiSeq2000, GAII, MiSeq | ENA: ERP002187, ERP001672 | [69] |
| Strongyloides stercoralis | 10B | Human, Canine | infective L3 | Roche 454 GS FLX | SRA: ERP000798 | [70] |
| post-parasitic L1 & L3, free-living female, post-free-living L1, infective L3, activated L3, parasitic female | Illumina HiSeq2000 | AE: E-MTAB-1164 | [72] | |||
| drug-treated infective L3 | Illumina HiSeq2000 | AE: E-MTAB-2192 | [74] | |||
| Strongyloides venezuelensis | 10B | Rat | egg/L1, infective L3, induced L3, parasitic female | Roche 454 GS FLX | SRA: DRA000395 | [71] |
| egg, L1, infective L3, induced L3, free-living female, parasitic female | Illumina HiSeq2000 | BP: PRJDB3457 | [69] | |||
| Small RNAs | ||||||
| Strongyloides ratti | 10B | Rat | infective L3, mixed stages | Illumina GAII | GEO: GSE41402 | [75] |
| Proteins | ||||||
| Strongyloides ratti | 10B | Rat | ESP from infective L3, parasitic female, free-living female | TS LTQ MS | [76] | |
| parasitic female, free-living female | TFS LTQ-Orbitrap Velos MS | [69] | ||||
Abbreviations: European Bioinformatics Institute (EBI); EBI ArrayExpress (AE); EBI European Nucleotide Archive (ENA); excretory/secretory products (ESP); mass spectrometer (MS); National Center for Biotechnology Information (NCBI); NCBI BioProject (BP); NCBI Gene Expression Omnibus (GEO); NCBI Sequence Read Archive (SRA); Thermo-Fisher/ThermoFisher Scientific (TF/TFS)