Table 4.
Selected post-genomic studies of clade V nematodes [2].
| Species | Clade [4] | Host | Life stage(s) | Platform / Method | Accession | Reference |
|---|---|---|---|---|---|---|
| mRNAs | ||||||
| Ancylostoma ceylanicum | 9B | Canine, Feline, Human zoonosis | infective larva, L4, adult, drug-treated adult | Illumina HiSeq2000 | BP: PRJNA231490 | [78] |
| Ancylostoma caninum | 9B | Canine | infective L3, serum-stimulated L3, adult male, adult female | Roche 454 GS FLX | BP: PRJNA20441 | [81] |
| Angiostrongylus cantonensis | 9C | Rat, Human zoonosis | L5 | Illumina Solexa | n/a | [108] |
| L5, adult female | Illumina HiSeq2500 | BP: PRJNA314004 | XU | |||
| Angiostrongylus vasorum | 9C | Canine | adult | Illumina GAII | n/a | [104] |
| Cooperia oncophora | 9B | Ruminant | egg, L1, L2, L3 sheathed, L3 exsheathed, L4, adult female, adult male | Roche 454 GS FLX | ENA: PRJNA72571 | [83] |
| Cylicostephanus goldi | 9B | Horse | adult | Roche 454 GS FLX | ENA: PRJEB3962 | [110] |
| Dictyocaulus filaria | 9B | Ruminant | mixed sex adult | Illumina GAII | SRA: SRP032224 | [98] |
| Dictyocaulus viviparus | 9B | Bovine | mixed sex adult | Illumina HiSeq2000 | SRA: SRR1021571, SRR1021573 | [98] |
| egg, L1, L2, L3, L4, L5 female, L5 male, adult female, adult male | Illumina HiSeq2000 | BP: PRJNA72587 | [99] | |||
| Haemonchus contortus | 9B | Ruminant | L3 sheathed, L3 exsheathed | Roche 454 GS FLX | n/a | [87] |
| adult | Illumina GA II | n/a | [111] | |||
| egg, L1, L2, L3, L4, adult female, adult male | Illumina GA II | SRA: SRP026668 | [86] | |||
| egg, L1, L3, L4, adult female, adult male, adult tissues | Illumina HiSeq2000 | ENA: PRJEB1360 | [85] | |||
| Heligmosomoides polygyrus (bakeri) | 9B | Mouse | adult female, adult male | Illumina GA II | n/a | [100] |
| Necator americanus | 9B | Human | adult | Roche 454 GS FLX | n/a | [82] |
| L3, adult | Roche 454 GS FLX | BP: PRJNA72135 | [79] | |||
| Nippostrongylus brasiliensis | 9B | Rat | egg, L3, L4, adult | Illumina GA II | n/a | [103] |
| Oesophagostomum dentatum | 9B | Swine | adult female, adult male | Illumina GA IIx | GB: SRR393668, SRR393669 | [95] |
| Ostertagia ostertagi | 9B | Bovine | egg, L1, L2, sheathed L3, exsheathed L3, L4, adult | Roche 454 GS FLX | ENA: PRJNA72577 | [83] |
| Teladorsagia (Ostertagia) circumcincta | 9B | Sheep, Ruminant | adult | Roche 454 GS FLX | SRA: SRR328404, SRR328405 | [91] |
| Trichostrongylus colubriformis | 9B | Sheep | adult female, adult male | Roche 454 GS FLX | SRA: SRP002574 | [112] |
| Small RNAs | ||||||
| Haemonchus contortus | 9B | Ruminant | sheathed L3, adult | Illumina GA II | BP: PRJNA151375 | [46] |
| Heligmosomoides polygyrus (bakeri) | 9B | Mouse | egg, L3, adult | Illumina GA IIx | GEO: GSE55978 | [102] |
| Nippostrongylus brasiliensis | 9B | Rat | adult | Illumina MiSeq | GEO: GSE56651 | [23] |
| Proteins | ||||||
| Ancylostoma caninum | 9B | Canine | ESP from adult | BD micrOTOF-Q | [80] | |
| Angiostrongylus cantonensis | 9C | Rat, Human zoonosis | ESP from adult female | BD maXis ESI-Q-TOF MS | [107] | |
| tissue from L3, female L5, male L5, adult female, adult male | AB 4800 MALDI-TOF/TOF MS | [105] | ||||
| L3, L5 | BD Ultraflex MALDI-TOF MS | [109] | ||||
| Angiostrongylus costaricensis | 9C | Rat, Human | tissue from adult female, adult male | ABI Sciex 5800 MALDI-TOF/TOF MS | [106] | |
| Cooperia oncophora | 9B | Ruminant | ESP from adult | AB 4800 MALDI-TOF/TOF MS | [84] | |
| Haemonchus contortus | 9B | Ruminant | ivermectin-susceptible & -resistant adult female | W MALDI-TOF MS | [88] | |
| adult tissue | BD amaZon ETD MS | [89] | ||||
| sheathed L3, exsheathed L3 | ABI Sciex 5800 MALDI-TOF/TOF MS | [90] | ||||
| Heligmosomoides polygyrus (bakeri) | 9B | Mouse | ESP from adult | BD maXis UHR-TOF MS | [101] | |
| 9B | Mouse | ESP from adult | W QTOF micro MS | [100] | ||
| Necator americanus | 9B | Human | L3, adult | AB Sciex 5600 MS/MS | [79] | |
| Nippostrongylus brasiliensis | 9B | Rat | ESP from L3 and adult | ABI Sciex Triple TOF 5600/5800 MS | [103] | |
| Oesophagostomum dentatum | 9B | Swine | drug-treated L3 | BD Ultraflex II MALDI-TOF/TOF MS | [96] | |
| sheathed L3, exsheathed L3 | BD Ultraflex II MALDI-TOF/TOF MS | [97] | ||||
| Teladorsagia (Ostertagia) circumcincta | 9B | Sheep, Ruminant | ESP from infective L3 | BD Esquire HCTplus ESI MS | [92] | |
| ESP from L4 | TF Electron LTQ ion trap MS | [93] | ||||
| extracellular vesicles in ESP from L4 | BD Esquire HCTplus ESI MS | [94] | ||||
Abbreviations: Applied Biosystems (AB); Bruker Daltonics (BD); European Bioinformatics Institute (EBI); EBI European Nucleotide Archive (ENA); excretory/secretory products (ESP); mass spectrometer (MS); matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF); National Center for Biotechnology Information (NCBI); NCBI BioProject (BP); NCBI Gene Expression Omnibus (GEO); NCBI Sequence Read Archive (SRA); Thermo-Fisher/ThermoFisher Scientific (TF/TFS); Waters (W); Xiamen University, China (XU)