Table 1.
Chromosomal-level comparisons of locations of peaks enriched in OG vs. gene density, and percent of 5′-GG-3′ sequences in the reference chromosome vs. peaks of OG enrichment from the WT- and Ogg1-/--MEF cell genomes.
Chr* | Length (Mbp) | Gene density (genes/Mbp) | Peak Count in WT MEFs | Peak Count in Ogg1-/-MEFs | % 5′-GG-3′ (Ref Chr)* | % 5′-GG-3′ (WT MEF peaks) | %5′-GG-3′ (Ogg1-/- MEF peaks) |
---|---|---|---|---|---|---|---|
1 | 197 | 6.1 | 689 | 657 | 10.1 | 11.1 | 11.6 |
2 | 182 | 10.1 | 525 | 199 | 10.6 | 11.3 | 12.9 |
3 | 160 | 6.3 | 583 | 1023 | 9.8 | 10.5 | 10.9 |
4 | 156 | 8.3 | 445 | 555 | 10.8 | 11.3 | 11.0 |
5 | 153 | 7.9 | 689 | 1072 | 10.8 | 12.1 | 12.5 |
6 | 150 | 7.8 | 544 | 753 | 10.3 | 11.3 | 11.6 |
7 | 153 | 13.1 | 467 | 366 | 11.2 | 11.5 | 11.5 |
8 | 132 | 7.9 | 441 | 198 | 10.7 | 11.9 | 13.0 |
9 | 124 | 9.9 | 435 | 583 | 10.9 | 11.5 | 11.4 |
10 | 130 | 7.6 | 704 | 3393 | 10.3 | 10.8 | 11.9 |
11 | 122 | 13.7 | 450 | 302 | 11.5 | 12.1 | 12.9 |
12 | 121 | 5.9 | 278 | 154 | 10.5 | 11.0 | 12.0 |
13 | 120 | 6.7 | 484 | 937 | 10.3 | 10.8 | 11.1 |
14 | 125 | 6.1 | 440 | 1061 | 10.2 | 11.0 | 10.9 |
15 | 103 | 7.7 | 599 | 2207 | 10.6 | 11.3 | 12.1 |
16 | 98 | 6.8 | 358 | 1111 | 10.0 | 11.0 | 11.7 |
17 | 95 | 11.1 | 362 | 665 | 10.9 | 11.7 | 13.1 |
18 | 91 | 5.8 | 391 | 676 | 10.2 | 11.1 | 11.4 |
19 | 61 | 11.8 | 380 | 1796 | 10.9 | 11.6 | 12.0 |
X | 167 | 5.6 | 453 | 387 | 9.6 | 10.4 | 11.6 |
Y | 16 | 0.6 | 0 | 2 | 9.5 | 0.0 | 14.4 |
Chromosome information was derived from the mouse-reference genome NCBI37/mm9.