Skip to main content
. 2017 May 15;8:15371. doi: 10.1038/ncomms15371

Table 2. X-ray data collection and refinement statistics.

Data collection  
 Beamline SSRL 12-2
 Wavelength (Å) 0.9795
 Space group P43
 Unit cell parameters (Å) a=b=88.3, c=255.0
 Resolution (Å) 50-1.97 (2.04-1.97)*
 Unique reflections 136,341 (13,627)*
 Redundancy 6.3 (6.2)*
 Completeness (%) 99.5 (99.5)*
 <I/σI> 15.4 (2.0)*
Rsym 0.16 (0.82)*
Rpim 0.07 (0.35)*
 CC1/2 0.99 (0.72)*
Za§ 2
   
Refinement statistics  
 Resolution (Å) 50–1.97
 Reflections (work) 130,202
 Reflections (test) 6,751
Rcryst(%)/Rfree(%) 18.1/20.8
 No. of atoms  
  Protein  
   HA1 3,987
   Fab 6,846
  Water 1,113
  Ion 1
  Glycan 56
  Other# 90
 Average B-value (Å2)  
  Protein  
   HA1 37.2
   Fab 30.5
  Water 40.0
  Ion 46.3
  Glycan 74.4
  Other# 77.2
 Wilson B-value (Å2) 22.7
   
R.m.s.d. from ideal geometry  
 Bond length (Å) 0.013
 Bond angle (°) 1.60
   
Ramachandran statistics (%)**  
 Favored 96.7
 Outliers 0.2

r.m.s.d., root mean squared deviation.

*Numbers in parentheses refer to the highest resolution shell.

RsymhklΣi|Ihkl,i−<Ihkl>|/ΣhklΣiIhkl,i and Rpimhkl(1/(n−1))1/2 Σi|Ihkl,i−<Ihkl>|/ΣhklΣiIhkl,i, where Ihkl,i is the scaled intensity of the ith measurement of reflection h, k, l, <Ihkl> is the average intensity for that reflection, and n is the redundancy.

CC1/2=Pearson correlation coefficient between two random half datasets.

§Za is the number of HA1-Fab complexes per crystallographic asymmetric unit.

Rcrysthkl|FoFc|/Σhkl|Fo| × 100, where Fo and Fc are the observed and calculated structure factors, respectively.

Rfree was calculated as for Rcryst, but on a test set comprising 5% of the data excluded from refinement.

#Other includes non-water solvent and cryoprotectant.

**Calculated with MolProbity63.