Table 2. X-ray data collection and refinement statistics.
| Data collection | |
| Beamline | SSRL 12-2 |
| Wavelength (Å) | 0.9795 |
| Space group | P43 |
| Unit cell parameters (Å) | a=b=88.3, c=255.0 |
| Resolution (Å) | 50-1.97 (2.04-1.97)* |
| Unique reflections | 136,341 (13,627)* |
| Redundancy | 6.3 (6.2)* |
| Completeness (%) | 99.5 (99.5)* |
| <I/σI> | 15.4 (2.0)* |
| Rsym† | 0.16 (0.82)* |
| Rpim† | 0.07 (0.35)* |
| CC1/2‡ | 0.99 (0.72)* |
| Za§ | 2 |
| Refinement statistics | |
| Resolution (Å) | 50–1.97 |
| Reflections (work) | 130,202 |
| Reflections (test) | 6,751 |
| Rcryst(%)‖/Rfree(%)¶ | 18.1/20.8 |
| No. of atoms | |
| Protein | |
| HA1 | 3,987 |
| Fab | 6,846 |
| Water | 1,113 |
| Ion | 1 |
| Glycan | 56 |
| Other# | 90 |
| Average B-value (Å2) | |
| Protein | |
| HA1 | 37.2 |
| Fab | 30.5 |
| Water | 40.0 |
| Ion | 46.3 |
| Glycan | 74.4 |
| Other# | 77.2 |
| Wilson B-value (Å2) | 22.7 |
| R.m.s.d. from ideal geometry | |
| Bond length (Å) | 0.013 |
| Bond angle (°) | 1.60 |
| Ramachandran statistics (%)** | |
| Favored | 96.7 |
| Outliers | 0.2 |
r.m.s.d., root mean squared deviation.
*Numbers in parentheses refer to the highest resolution shell.
†Rsym=ΣhklΣi|Ihkl,i−<Ihkl>|/ΣhklΣiIhkl,i and Rpim=Σhkl(1/(n−1))1/2 Σi|Ihkl,i−<Ihkl>|/ΣhklΣiIhkl,i, where Ihkl,i is the scaled intensity of the ith measurement of reflection h, k, l, <Ihkl> is the average intensity for that reflection, and n is the redundancy.
‡CC1/2=Pearson correlation coefficient between two random half datasets.
§Za is the number of HA1-Fab complexes per crystallographic asymmetric unit.
‖Rcryst=Σhkl|Fo−Fc|/Σhkl|Fo| × 100, where Fo and Fc are the observed and calculated structure factors, respectively.
¶Rfree was calculated as for Rcryst, but on a test set comprising 5% of the data excluded from refinement.
#Other includes non-water solvent and cryoprotectant.
**Calculated with MolProbity63.