TABLE 1.
Primer, probe, and inhibition control synthetic gene sequences
Primer, probe, or control gene name | Sequence (5′–3′)a |
---|---|
E. vermicularis 5S_fwd | CAAACAACTGCATCACCAATAAC |
E. vermicularis 5S_rev | AGTGTAGAGCAATAAGCAGTAAAG |
E. vermicularis 5S probe | FAM-TACCAACAACACTTGCACGTCTCTTCA-IBFQ |
E. caproni 28S_fwd | TAGGCAATGTGGTGTTCAGG |
E. caproni 28S_rev | CATAGAGGGTGAAAGGCCC |
E. caproni 28S probe | FAM-AGGACTTAGGGTGGAGCAGTATCCC-IBFQ |
Inhib Con_fwd | GGTTACGTTACCGATTGTGTTAT |
Inhib Con_rev | GCACGGAGAAGTATTCTTGATATAG |
Inhibition control probe | JOE-TCGCATACTATGACCGAGACCCTGT-IBFQ |
Inhibition control sequence | CCAATGCAATGGCTAACACAATATTATATTTTAAAGAATGAATATCATAAGACCATGCTAGCGTATGATAATGGATCTTGGACATAAGATATAGTTCTTATGAAGAGGCAAAAAAACACGATGATGGACTTATCATTATTTCTATATTCTTACAAGTATTGGATCATAA |
FAM, 6-carboxyfluorescein; IBFQ, Iowa black fluorescent quencher; JOE, 6′-carboxy-4′,5′-dichloro-2′,7′-dimethoxyfluorescein, succinimidyl ester.