Table 5.
Identification of TF (transcription factors) genes down-regulated in resistant (R1, R2, and R3) and susceptible (S) Beckmannia syzigachne plants using the RPKM method for fold-change.
| Gene | Contig | Fold-change (R1 value/S value)∗,a | Fold-change (R2 value/S value)∗,a | Fold-change (R3 value/S value)∗,a |
|---|---|---|---|---|
| bsy-MYB39 | comp112703 | -5.0∗ (4.6/23.1) | -3.9∗ (5.9/23.1) | -3.3∗ (7.0/23.1) |
| bsy-MYB2 | comp12870 | -4.4∗ (6.5/28.7) | -4.8∗ (6.0/28.7) | -6.4∗ (4.9/28.7) |
| bsy-ARF5 | comp25306 | -3.2∗ (17.8/57.6) | -3.8∗ (15.0/57.6) | -5.8∗ (10.0/57.6) |
| bsy-ARF8 | comp10726 | -3.9∗ (3.9/15.3) | -4.4∗ (3.5/15.3) | -4.5∗ (3.4/15.3) |
∗Significant difference (P < 0.05) from GenePattern analysis.
a “-” Indicates that genes in the R lines were down-regulated compared with genes in the S lines. RPKM, reads per kb of exon model per million mapped reads.