Table 1.
Up-regulated genes in StMYB44-overexpressing lines
| Gene_id | Gene | Fold change OE22/WT | P-value | Fold change OE30/WT | P-value | Average fold change |
|---|---|---|---|---|---|---|
| PGSC0003DMG400005840 | Calcineurin B | inf | 0.00005 | inf | 0.00005 | inf |
| PGSC0003DMG400031059 | Conserved gene of unknown function | inf | 0.00005 | inf | 0.00145 | inf |
| PGSC0003DMG400025420 | Transposase | inf | 0.00005 | inf | 0.00005 | inf |
| PGSC0003DMG400003316 | Tuber-specific and sucrose- responsive element-binding factor (TSF transgene) | 30.36 | 0.00005 | 64.74 | 0.00005 | 44.34 |
| PGSC0003DMG400019773 | Sesquiterpene synthase 2 | 35.14 | 0.0001 | 18.37 | 0.00005 | 25.40 |
| PGSC0003DMG400013696 | Cytochrome P450 | 22.84 | 0.00005 | 27.68 | 0.00005 | 25.14 |
| PGSC0003DMG400016180 | Flowering locus T | 15.35 | 0.00265 | 16.33 | 0.0002 | 15.83 |
| PGSC0003DMG400010050 | Proline oxidase/dehydrogenase 1 | 8.21 | 0.00005 | 30.42 | 0.00005 | 15.80 |
| PGSC0003DMG400003954 | Conserved gene of unknown function | 15.54 | 0.00265 | 15.96 | 0.00285 | 15.75 |
| PGSC0003DMG400025628 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain-containing protein | 11.64 | 0.00005 | 18.77 | 0.00005 | 14.78 |
| PGSC0003DMG400007796 | DNA-directed RNA polymerase II largest subunit | 12.22 | 0.00005 | 17.12 | 0.00005 | 14.46 |
| PGSC0003DMG400000957 | ATP-binding protein | 15.04 | 0.00005 | 13.70 | 0.00005 | 14.35 |
| PGSC0003DMG400014086 | Gene of unknown function | 22.40 | 0.0001 | 8.84 | 0.0009 | 14.07 |
| PGSC0003DMG400024452 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain-containing protein | 11.26 | 0.00005 | 17.14 | 0.00005 | 13.89 |
| PGSC0003DMG400023230 | 2-Isopropylmalate synthase A | 9.54 | 0.00005 | 15.91 | 0.00005 | 12.32 |
| PGSC0003DMG400000776 | Extensin (ext) | 14.14 | 0.00005 | 8.73 | 0.00005 | 11.11 |
| PGSC0003DMG400002046 | Aspartic proteinase nepenthesin-1 | 9.29 | 0.00685 | 13.09 | 0.0005 | 11.03 |
| PGSC0003DMG400005670 | MAEWEST protein | 8.62 | 0.00075 | 13.18 | 0.00385 | 10.66 |
| PGSC0003DMG400024113 | Gene of unknown function | 11.46 | 0.0007 | 8.85 | 0.0008 | 10.07 |
| PGSC0003DMG400024602 | Conserved gene of unknown function | 8.44 | 0.0051 | 11.99 | 0.0052 | 10.06 |
| PGSC0003DMG400019274 | Indole-3-acetic acid-amido synthetase GH3.6 | 8.17 | 0.00005 | 8.93 | 0.00005 | 8.54 |
| PGSC0003DMG400031850 | 2-Hydroxyisoflavanone dehydratase | 6.69 | 0.00345 | 10.20 | 0.0068 | 8.26 |
| PGSC0003DMG400031437 | Neryl diphosphate synthase 1 | 5.78 | 0.00005 | 9.51 | 0.00005 | 7.42 |
| PGSC0003DMG400028593 | Histidine-containing phosphotransfer protein | 5.08 | 0.0048 | 9.91 | 0.00075 | 7.10 |
| PGSC0003DMG400006319 | Beta-glucosidase 01 | 4.51 | 0.00005 | 10.93 | 0.00005 | 7.02 |
| PGSC0003DMG400015173 | ATP-binding protein | 10.03 | 0.00005 | 4.87 | 0.00005 | 6.99 |
| PGSC0003DMG400015005 | Heavy metal-associated domain- containing protein | 4.37 | 0.0074 | 11.11 | 0.0005 | 6.97 |
| PGSC0003DMG402002024 | Zinc finger protein | 5.75 | 0.00005 | 8.29 | 0.00005 | 6.91 |
| PGSC0003DMG400006448 | Caffeoyl-CoA O-methyltransferase | 4.32 | 0.00005 | 10.85 | 0.00005 | 6.84 |
| PGSC0003DMG400016722 | Glutathione S-transferase | 4.21 | 0.00875 | 10.95 | 0.00005 | 6.79 |
| PGSC0003DMG400018579 | Histidine phosphotransfer protein | 5.52 | 0.00005 | 8.22 | 0.00005 | 6.74 |
| PGSC0003DMG400019293 | NAC domain-containing protein | 7.66 | 0.00145 | 5.65 | 0.00095 | 6.58 |
| PGSC0003DMG400023112 | Kinesin | 5.49 | 0.0009 | 6.93 | 0.0004 | 6.17 |
| PGSC0003DMG400010713 | Salt-responsive protein 2 | 8.54 | 0.00005 | 4.27 | 0.00005 | 6.04 |
| PGSC0003DMG400002899 | AP2/ERF domain-containing transcription factor | 7.65 | 0.0001 | 4.76 | 0.0019 | 6.03 |
| PGSC0003DMG400000493 | Carbonic anhydrase | 6.90 | 0.00005 | 5.22 | 0.00005 | 6.00 |
| PGSC0003DMG400020156 | Pectase lyase | 5.96 | 0.00005 | 5.89 | 0.00005 | 5.92 |
| PGSC0003DMG400011226 | Sodium/potassium/calcium exchanger 6 | 4.66 | 0.00005 | 7.41 | 0.00005 | 5.87 |
| PGSC0003DMG403007838 | Purple acid phosphatase 3 | 4.37 | 0.00055 | 7.87 | 0.00005 | 5.87 |
| PGSC0003DMG400003084 | Two-component response regulator ARR8 | 7.72 | 0.00005 | 4.29 | 0.00005 | 5.76 |
| PGSC0003DMG400024593 | Glycosyltransferase UGT90A7 | 6.44 | 0.00005 | 5.04 | 0.00005 | 5.70 |
| PGSC0003DMG400000730 | Transcription factor | 4.66 | 0.00005 | 6.56 | 0.00005 | 5.53 |
| PGSC0003DMG400009268 | Proteinase inhibitor | 4.07 | 0.00005 | 7.15 | 0.00005 | 5.39 |
| PGSC0003DMG400017189 | Desacetoxyvindoline 4-hydroxylase | 5.23 | 0.00035 | 5.11 | 0.00005 | 5.17 |
| PGSC0003DMG400028229 | Calcium-dependent protein kinase CDPK12 | 4.85 | 0.00005 | 5.12 | 0.00005 | 4.98 |
| PGSC0003DMG400002520 | Zinc finger protein | 4.06 | 0.00005 | 5.48 | 0.00005 | 4.72 |
| PGSC0003DMG400012977 | VQ motif-containing protein | 4.80 | 0.0067 | 4.61 | 0.0053 | 4.70 |
| PGSC0003DMG400002519 | Zinc finger protein | 4.34 | 0.00005 | 4.88 | 0.00005 | 4.61 |
| PGSC0003DMG400027212 | ATP:citrate lyase | 4.22 | 0.00015 | 4.86 | 0.00005 | 4.53 |
| PGSC0003DMG400032780 | Conserved gene of unknown function | 4.68 | 0.00005 | 4.22 | 0.00005 | 4.44 |
| PGSC0003DMG400026023 | Nuc-1 negative regulatory protein preg | 4.11 | 0.00105 | 4.73 | 0.0001 | 4.41 |
| PGSC0003DMG400025479 | PHAP2A protein | 4.02 | 0.00005 | 4.51 | 0.00005 | 4.26 |