Table 2.
Down-regulated genes in StMYB44-overexpressing lines
| Gene_id | Gene | Fold change OE22/WT | P-value | Fold change OE30/WT | P-value | Average fold change |
|---|---|---|---|---|---|---|
| PGSC0003DMG400000207 | Arabinogalactan peptide 16 | 0.00 | 0.0001 | 0.00 | 0.00005 | 0.00 |
| PGSC0003DMG400019040 | Gene of unknown function | 0.00 | 0.0001 | 0.00 | 0.00005 | 0.00 |
| PGSC0003DMG400020686 | Gene of unknown function | 0.00 | 0.00005 | 0.00 | 0.00005 | 0.00 |
| PGSC0003DMG400014767 | CND41, chloroplast nucleoid DNA- binding protein | 0.02 | 0.00265 | 0.02 | 0.00265 | 0.02 |
| PGSC0003DMG400011740 | SGA rhamnose:beta-solanine/beta- chaconine rhamnosyltransferase | 0.02 | 0.00005 | 0.02 | 0.00005 | 0.02 |
| PGSC0003DMG400004143 | SF16 protein | 0.03 | 0.00265 | 0.03 | 0.00005 | 0.03 |
| PGSC0003DMG400011334 | Phylloplanin | 0.06 | 0.00005 | 0.02 | 0.00265 | 0.04 |
| PGSC0003DMG400020677 | Conserved gene of unknown function | 0.05 | 0.0028 | 0.04 | 0.00265 | 0.04 |
| PGSC0003DMG400024770 | Conserved gene of unknown function | 0.04 | 0.00005 | 0.04 | 0.00005 | 0.04 |
| PGSC0003DMG400014104 | Patatin-2-Kuras 4 | 0.05 | 0.00005 | 0.05 | 0.00005 | 0.05 |
| PGSC0003DMG400023922 | Cytoplasmic small heat shock protein class I | 0.11 | 0.00005 | 0.03 | 0.00005 | 0.05 |
| PGSC0003DMG400030957 | Cysteine proteinase | 0.05 | 0.00265 | 0.06 | 0.00015 | 0.05 |
| PGSC0003DMG400000123 | Calcium-transporting ATPase, endoplasmic reticulum-type | 0.07 | 0.00005 | 0.06 | 0.00005 | 0.06 |
| PGSC0003DMG400006782 | Conserved gene of unknown function | 0.09 | 0.00005 | 0.05 | 0.00005 | 0.07 |
| PGSC0003DMG400000984 | 3-Oxo-5-alpha-steroid 4-dehydrogenase family protein | 0.05 | 0.0028 | 0.10 | 0.0068 | 0.07 |
| PGSC0003DMG400039214 | Arachidonic acid-induced DEA1 | 0.04 | 0.00005 | 0.14 | 0.00005 | 0.08 |
| PGSC0003DMG400010048 | Conserved gene of unknown function | 0.08 | 0.00005 | 0.08 | 0.00005 | 0.08 |
| PGSC0003DMG400011749 | UDP-galactose:solanidine galactosyltransferase | 0.05 | 0.00005 | 0.14 | 0.00005 | 0.08 |
| PGSC0003DMG402017090 | Patatin-04/09 | 0.08 | 0.00005 | 0.08 | 0.00005 | 0.08 |
| PGSC0003DMG400010067 | DNA-binding protein | 0.10 | 0.0004 | 0.07 | 0.00015 | 0.08 |
| PGSC0003DMG400011750 | Cytochrome P-450 | 0.07 | 0.00005 | 0.10 | 0.00005 | 0.08 |
| PGSC0003DMG400016458 | Multi-antimicrobial extrusion family protein | 0.06 | 0.0002 | 0.12 | 0.00005 | 0.09 |
| PGSC0003DMG400011752 | Cellulose synthase | 0.06 | 0.00005 | 0.12 | 0.00005 | 0.09 |
| PGSC0003DMG400029503 | ETAG-A3 | 0.09 | 0.00005 | 0.08 | 0.00005 | 0.09 |
| PGSC0003DMG400026404 | Fragment | 0.09 | 0.00005 | 0.08 | 0.00005 | 0.09 |
| PGSC0003DMG400000048 | Cysteine synthase | 0.08 | 0.00005 | 0.10 | 0.00005 | 0.09 |
| PGSC0003DMG400024983 | Tuber-specific and sucrose- responsive element-binding factor | 0.12 | 0.00005 | 0.08 | 0.00005 | 0.10 |
| PGSC0003DMG402008890 | Aldo-keto reductase family 4 member C10 | 0.13 | 0.00005 | 0.07 | 0.00005 | 0.10 |
| PGSC0003DMG400011751 | 2-Oxoglutarate-dependent dioxygenase | 0.09 | 0.00005 | 0.10 | 0.00005 | 0.10 |
| PGSC0003DMG400004616 | Invertase inhibitor | 0.12 | 0.0077 | 0.08 | 0.00315 | 0.10 |
| PGSC0003DMG400009033 | Myb 12 transcription factor | 0.07 | 0.00005 | 0.13 | 0.00005 | 0.10 |
| PGSC0003DMG400002495 | C2H2L domain class transcription factor | 0.11 | 0.00005 | 0.09 | 0.00005 | 0.10 |
| PGSC0003DMG400021142 | DWARF1/DIMINUTO | 0.10 | 0.00005 | 0.11 | 0.00005 | 0.10 |
| PGSC0003DMG400022933 | Auxin-induced beta-glucosidase | 0.07 | 0.00005 | 0.14 | 0.00005 | 0.10 |
| PGSC0003DMG400012797 | Short-chain dehydrogenase/ reductase family protein | 0.11 | 0.00005 | 0.10 | 0.00005 | 0.10 |
| PGSC0003DMG400018930 | Proteinase inhibitor I4, serpin | 0.10 | 0.0053 | 0.11 | 0.0007 | 0.10 |
| PGSC0003DMG400002028 | Cytoplasmic small heat shock protein class I | 0.15 | 0.00015 | 0.07 | 0.003 | 0.10 |
| PGSC0003DMG400031792 | Endo-1,4-beta-glucanase | 0.11 | 0.00005 | 0.10 | 0.00005 | 0.11 |
| PGSC0003DMG400003411 | DNA-damage-inducible protein f | 0.15 | 0.00005 | 0.08 | 0.00005 | 0.11 |
| PGSC0003DMG400011350 | OrfB protein | 0.10 | 0.00005 | 0.11 | 0.00005 | 0.11 |
| PGSC0003DMG400012763 | C-4 sterol methyl oxidase | 0.10 | 0.00005 | 0.12 | 0.00005 | 0.11 |
| PGSC0003DMG400014339 | Remorin | 0.13 | 0.00005 | 0.09 | 0.00005 | 0.11 |
| PGSC0003DMG400032817 | Squamosa promoter binding | 0.16 | 0.00005 | 0.07 | 0.00285 | 0.11 |
| PGSC0003DMG400017505 | Nam 11 | 0.13 | 0.00135 | 0.09 | 0.00435 | 0.11 |
| PGSC0003DMG400012183 | Endo-1,4-beta-glucanase | 0.11 | 0.00605 | 0.12 | 0.0008 | 0.11 |
| PGSC0003DMG401019681 | Serine-threonine protein kinase, plant-type | 0.10 | 0.00345 | 0.12 | 0.00005 | 0.11 |
| PGSC0003DMG400010215 | Cysteine protease | 0.08 | 0.00005 | 0.15 | 0.00005 | 0.11 |
| PGSC0003DMG400020777 | Gene of unknown function | 0.13 | 0.00005 | 0.10 | 0.00005 | 0.11 |
| PGSC0003DMG400014347 | PAR-1c protein | 0.19 | 0.00005 | 0.07 | 0.00005 | 0.11 |
| PGSC0003DMG400014543 | Monoglyceride lipase | 0.10 | 0.00005 | 0.13 | 0.00005 | 0.12 |
| PGSC0003DMG400023419 | Receptor kinase THESEUS 1 | 0.13 | 0.00015 | 0.11 | 0.0001 | 0.12 |
| PGSC0003DMG400000523 | Kinesin light chain | 0.24 | 0.00005 | 0.06 | 0.0002 | 0.12 |
| PGSC0003DMG400018140 | Cytochrome P450 71A4 | 0.14 | 0.0084 | 0.11 | 0.0048 | 0.12 |
| PGSC0003DMG400021814 | Conserved gene of unknown function | 0.18 | 0.0004 | 0.09 | 0.00395 | 0.12 |
| PGSC0003DMG400007552 | Conserved gene of unknown function | 0.10 | 0.00005 | 0.15 | 0.00005 | 0.13 |
| PGSC0003DMG400001544 | Conserved gene of unknown function | 0.12 | 0.0008 | 0.14 | 0.00005 | 0.13 |
| PGSC0003DMG400024362 | Anthranilate N-benzoyltransferase protein | 0.24 | 0.00005 | 0.07 | 0.00005 | 0.13 |
| PGSC0003DMG400015230 | Pectate lyase | 0.18 | 0.00005 | 0.09 | 0.00005 | 0.13 |
| PGSC0003DMG401028252 | Beta-fructofuranosidase | 0.15 | 0.00005 | 0.11 | 0.00005 | 0.13 |
| PGSC0003DMG400000719 | Sec14 cytosolic factor | 0.15 | 0.00005 | 0.12 | 0.00005 | 0.13 |
| PGSC0003DMG400005526 | Cytochrome P450 | 0.21 | 0.00005 | 0.08 | 0.00005 | 0.13 |
| PGSC0003DMG400005734 | FK506-binding protein | 0.21 | 0.00005 | 0.08 | 0.00005 | 0.13 |
| PGSC0003DMG400031763 | Conserved gene of unknown function | 0.12 | 0.00005 | 0.16 | 0.00005 | 0.14 |
| PGSC0003DMG400028622 | Acyl-protein thioesterase | 0.10 | 0.00005 | 0.18 | 0.00005 | 0.14 |
| PGSC0003DMG400019429 | Conserved gene of unknown function | 0.16 | 0.00005 | 0.12 | 0.0001 | 0.14 |
| PGSC0003DMG400030784 | Glutaredoxin family protein | 0.17 | 0.0004 | 0.11 | 0.0007 | 0.14 |
| PGSC0003DMG400012147 | Conserved gene of unknown function | 0.19 | 0.00015 | 0.10 | 0.00705 | 0.14 |
| PGSC0003DMG400006221 | Conserved gene of unknown function | 0.15 | 0.00005 | 0.14 | 0.00005 | 0.14 |
| PGSC0003DMG400001598 | Snakin-2 | 0.14 | 0.00005 | 0.15 | 0.00005 | 0.15 |
| PGSC0003DMG400027047 | UPF0497 membrane protein | 0.14 | 0.00005 | 0.15 | 0.00005 | 0.15 |
| PGSC0003DMG402003937 | P69E protein | 0.18 | 0.00395 | 0.12 | 0.00735 | 0.15 |
| PGSC0003DMG401031196 | WRKY transcription factor 16 | 0.20 | 0.00005 | 0.11 | 0.00005 | 0.15 |
| PGSC0003DMG400005633 | Conserved gene of unknown function | 0.22 | 0.00005 | 0.10 | 0.00005 | 0.15 |
| PGSC0003DMG400007621 | GAST1 protein | 0.18 | 0.00045 | 0.12 | 0.0009 | 0.15 |
| PGSC0003DMG400004493 | GATA domain class transcription factor | 0.24 | 0.00005 | 0.09 | 0.00055 | 0.15 |
| PGSC0003DMG400027937 | Conserved gene of unknown function | 0.19 | 0.00105 | 0.12 | 0.0009 | 0.15 |
| PGSC0003DMG400003848 | Sugar transporter | 0.19 | 0.00005 | 0.12 | 0.00005 | 0.15 |
| PGSC0003DMG400004009 | Phospholipase C | 0.17 | 0.00005 | 0.14 | 0.00005 | 0.15 |
| PGSC0003DMG400029937 | ZIP family metal transporter | 0.16 | 0.00005 | 0.14 | 0.00005 | 0.15 |
| PGSC0003DMG402012192 | Zinc finger protein | 0.11 | 0.00005 | 0.23 | 0.00005 | 0.16 |
| PGSC0003DMG400003626 | Lactoylglutathione lyase | 0.16 | 0.00005 | 0.16 | 0.00005 | 0.16 |
| PGSC0003DMG400018565 | Alcohol dehydrogenase | 0.13 | 0.00005 | 0.21 | 0.00005 | 0.16 |
| PGSC0003DMG400013828 | Vacoular processing enzyme 1 | 0.21 | 0.00005 | 0.13 | 0.00005 | 0.16 |
| PGSC0003DMG400025896 | Proteinase inhibitor 1 | 0.18 | 0.00005 | 0.16 | 0.00005 | 0.16 |
| PGSC0003DMG400002156 | C-4 sterol methyl oxidase 2 | 0.23 | 0.00005 | 0.12 | 0.00005 | 0.17 |
| PGSC0003DMG400018611 | Glycosyl transferase family 17 protein | 0.22 | 0.0001 | 0.13 | 0.00125 | 0.17 |
| PGSC0003DMG402008895 | Tropinone reductase 1 | 0.21 | 0.00005 | 0.14 | 0.00005 | 0.17 |
| PGSC0003DMG400010223 | Phytophthora-inhibited protease 1 | 0.24 | 0.00005 | 0.12 | 0.00005 | 0.17 |
| PGSC0003DMG400020084 | Zinc finger protein | 0.24 | 0.00005 | 0.12 | 0.00015 | 0.17 |
| PGSC0003DMG402000097 | Conserved gene of unknown function | 0.22 | 0.00205 | 0.14 | 0.00135 | 0.17 |
| PGSC0003DMG400028295 | Gene of unknown function | 0.21 | 0.00005 | 0.14 | 0.00005 | 0.17 |
| PGSC0003DMG400016977 | Diphosphoinositol polyphosphate phosphohydrolase | 0.23 | 0.0005 | 0.13 | 0.0013 | 0.17 |
| PGSC0003DMG401019343 | DNA-binding protein | 0.18 | 0.00005 | 0.17 | 0.00005 | 0.18 |
| PGSC0003DMG400014027 | Germin | 0.21 | 0.00005 | 0.14 | 0.00005 | 0.18 |
| PGSC0003DMG400014173 | Polyphosphoinositide-binding protein | 0.18 | 0.00005 | 0.18 | 0.00005 | 0.18 |
| PGSC0003DMG400017398 | Snf1-kinase beta subunit, plants | 0.18 | 0.00005 | 0.18 | 0.00005 | 0.18 |
| PGSC0003DMG400014894 | Membrane protein | 0.20 | 0.0035 | 0.16 | 0.002 | 0.18 |
| PGSC0003DMG400000715 | Conserved gene of unknown function | 0.18 | 0.0001 | 0.18 | 0.00005 | 0.18 |
| PGSC0003DMG400017163 | Xenotropic and polytropic murine leukemia virus receptor pho1 | 0.24 | 0.00005 | 0.14 | 0.00005 | 0.18 |
| PGSC0003DMG400016651 | Transcription factor RF2b | 0.23 | 0.00005 | 0.15 | 0.00005 | 0.18 |
| PGSC0003DMG400005035 | ARF GAP-like zinc finger-containing protein ZIGA3 | 0.25 | 0.00005 | 0.14 | 0.00005 | 0.19 |
| PGSC0003DMG400001529 | Acidic 27 kDa endochitinase | 0.23 | 0.00005 | 0.15 | 0.00005 | 0.19 |
| PGSC0003DMG400021603 | Hydroxyproline-rich glycoprotein (HRGP)EEYAN | 0.16 | 0.00005 | 0.22 | 0.00005 | 0.19 |
| PGSC0003DMG402027687 | Wound-inducible carboxypeptidase | 0.19 | 0.00005 | 0.19 | 0.00005 | 0.19 |
| PGSC0003DMG400009892 | Prolyl endopeptidase | 0.22 | 0.00005 | 0.16 | 0.00005 | 0.19 |
| PGSC0003DMG400015726 | Glutathione S-transferase | 0.17 | 0.0004 | 0.22 | 0.00005 | 0.19 |
| PGSC0003DMG400030172 | Aspartic proteinase oryzasin-1 | 0.20 | 0.00005 | 0.19 | 0.00005 | 0.20 |
| PGSC0003DMG400029620 | Chalcone synthase 1B | 0.19 | 0.00005 | 0.21 | 0.00005 | 0.20 |
| PGSC0003DMG400032182 | Non-specific lipid-transfer protein | 0.20 | 0.00465 | 0.20 | 0.0019 | 0.20 |
| PGSC0003DMG400007018 | 3-Phosphoshikimate 1-carboxyvinyltransferase, chloroplastic | 0.21 | 0.00005 | 0.19 | 0.00005 | 0.20 |
| PGSC0003DMG400015169 | Esterase | 0.21 | 0.00005 | 0.20 | 0.00005 | 0.21 |
| PGSC0003DMG400014093 | Flavonol synthase | 0.20 | 0.00005 | 0.22 | 0.00005 | 0.21 |
| PGSC0003DMG400021423 | Homeodomain leucine-zipper 1 | 0.23 | 0.00005 | 0.19 | 0.00005 | 0.21 |
| PGSC0003DMG400005470 | Rab GTPase activator | 0.24 | 0.00005 | 0.20 | 0.00005 | 0.22 |
| PGSC0003DMG400019110 | Chalcone synthase 2 | 0.24 | 0.00005 | 0.20 | 0.00005 | 0.22 |
| PGSC0003DMG400009959 | Ornithine decarboxylase | 0.22 | 0.00005 | 0.22 | 0.00005 | 0.22 |
| PGSC0003DMG402024767 | Pectinesterase | 0.22 | 0.00005 | 0.23 | 0.00005 | 0.22 |
| PGSC0003DMG400011502 | PEP carboxylase kinase | 0.23 | 0.00005 | 0.22 | 0.00005 | 0.23 |
| PGSC0003DMG400010034 | Photoreceptor-interacting protein | 0.22 | 0.00005 | 0.25 | 0.00005 | 0.23 |
| PGSC0003DMG400022459 | BY-2 kinesin 5 | 0.22 | 0.00005 | 0.24 | 0.00005 | 0.23 |
| PGSC0003DMG400006185 | Skp1 1 | 0.25 | 0.00005 | 0.22 | 0.00005 | 0.23 |
| PGSC0003DMG400020253 | Ribonucleoside-diphosphate reductase small chain | 0.22 | 0.00005 | 0.24 | 0.00005 | 0.23 |