Table 2.
List of predicted chloroplast- or mitochondria-targeted DEAD-box RHs and stress-responsive expression patterns.
| Plant | Localization# | Gene ID | Modulation∗ |
||
|---|---|---|---|---|---|
| Drought | Cold | Salt | |||
| O. sativa | Chloroplast | Os01g43120 (RH25), Os01g73900 (RH58) Os01g08930 (RH39), Os03g51900 (OsRH16) Os04g43140 (RH13), Os06g40020(RH52) Os07g05050 (OsRH53), Os08g32090 (RH29) | Down-regulated | ||
| Os01g07080 (Q761Z9), Os09g34910 (OSRH7) | Up-regulated | ||||
| Os01g07080 (RH18), Os12g05230 (OsRH-like) | No change | ||||
| Mitochondria | Os01g10050 (OsRH20), Os03g19530 (RH24) Os07g45360 (RH57) | Down-regulated | |||
| Os05g01990 (RH17) | Up-regulated | ||||
| Drought | Cold | Heat | |||
| Z. mays | Chloroplast | GRMZM2G357923 (ZmRH13), GRMZM2G100043 (ZmRH22) GRMZM2G085587 (ZmRH41), GRMZM2G113267 (ZmRH50) GRMZM2G000823 (ZmRH38), GRMZM2G480809 (ZmRH7) AC198169.4_FG004 (ZmRH47) | Down-regulated | ||
| Mitochondria | GRMZM2G099253 (ZmRH36), GRMZM2G143246 (ZmRH20) GRMZM5G857708 (ZmRH14), GRMZM2G346278 (ZmRH17) | Down-regulated | |||
| GRMZM2G362850 (ZmRH30) | Up-regulated | ||||
| T. aestivum | Chloroplast | TRIAE_CS42_5BL_TGACv1_405472_AA1328050 (RH3) TRIAE_CS42_5AL_TGACv1_378036_AA1250890 (RH29) | Down-regulated | ||
| TRIAE_CS42_5BL_TGACv1_405071_AA1319340 (RH7) TRIAE_CS42_2DL_TGACv1_162281_AA0562360 (RH13) TRIAE_CS42_2AS_TGACv1_112416_AA0337680 (RH36) TRIAE_CS42_4DS_TGACv1_362163_AA1177330 (RH16) TRIAE_CS42_3DL_TGACv1_251106_AA0877450 (RH58) TRIAE_CS42_5AL_TGACv1_377240_AA1245280 (RH28) | No data available | ||||
| Mitochondria | TRIAE_CS42_4AS_TGACv1_307021_AA1016210 (RH24) TRIAE_CS42_3AS_TGACv1_211081_AA0684720 (RH20) TRIAE_CS42_6AL_TGACv1_473376_AA1530620 (RH47) TRIAE_CS42_4DL_TGACv1_344498_AA1147590 (RH17) TRIAE_CS42_4DL_TGACv1_342854_AA1123970 (RH50) TRIAE_CS42_3B_TGACv1_221078_AA0729540 (RH39) TRIAE_CS42_5DL_TGACv1_433272_AA1407810 (RH22) | No data available | |||
#Ensembl Plants (http://plants.ensembl.org) and NCBI (https://www.ncbi.nlm.nih.gov) were used to search for DEAD-box RHs. Cellular localization of proteins was predicted using TargetP 1.1 Server (http://www.cbs.dtu.dk/services/TargetP), ChloroP 1.1 Server (http://www.cbs.dtu.dk/services/ChloroP), and Predotar Server (https://urgi.versailles.inra.fr/predotar).
∗GENEVESTIGATOR (https://genevestigator.com) and BAR (www.bar.utoronto.ca) were used to analyze the stress-responsive expression patterns of each DEAD-box RH.