TABLE 1.
Genes upregulated in CP1ΩagrB compared to wild-type CP1
| Locus tag | GenBank accession no. | Gene | Putative gene product | Fold change | q value (%) |
|---|---|---|---|---|---|
| CP4_0093 | AM596_00445 | Protein NT01CX_0824 | 2.17 | 4.64 | |
| CP4_0143 | AM596_00685 | Conserved hypothetical protein | 3.64 | 4.64 | |
| CP4_0362 | AM596_01730 | Protein of unknown function | 2.29 | 5.92 | |
| CP4_0600 | AM596_02865 | NAD-dependent 4-hydroxybutyrate dehydrogenase | 2.25 | 4.64 | |
| CP4_0623 | AM596_02980 | Alpha,alpha-phosphotrehalase | 18.14 | 0.00 | |
| CP4_0732 | AM596_03505 | Conserved hypothetical protein | 2.22 | 10.72 | |
| CP4_0860 | AM596_04125 | Flavohemoprotein | 2.04 | 10.72 | |
| CP4_0862 | AM596_04135 | Rubredoxin | 3.66 | 11.51 | |
| CP4_0981 | AM596_04675 | eutP | Ethanolamine utilization protein, EutP | 2.75 | 4.64 |
| CP4_0982 | AM596_04680 | eutV | Response regulator | 2.65 | 7.77 |
| CP4_0985 | AM596_04695 | eutB | Ethanolamine ammonia-lyase, large subunit | 7.72 | 12.41 |
| CP4_0987 | AM596_04705 | eutL | Ethanolamine utilization protein EutL | 36.33 | 7.77 |
| CP4_0988 | AM596_04710 | pduJ | Propanediol utilization protein | 11.43 | 7.77 |
| CP4_0991 | AM596_04725 | eutT | Ethanolamine utilization cobalamin | 6.68 | 11.51 |
| CP4_0992 | AM596_04730 | pduL | Propanediol utilization protein | 5.93 | 12.41 |
| CP4_1183 | AM596_05605 | Ferredoxin hydrogenase | 2.48 | 11.51 | |
| CP4_1290 | AM596_06085 | Conserved hypothetical protein | 2.16 | 5.92 | |
| CP4_1391 | AM596_06550 | Putative endoribonuclease L-PSP | 2.79 | 7.77 | |
| CP4_1492 | AM596_07040 | Threonine dehydratase | 2.97 | 5.92 | |
| CP4_1587 | AM596_07465 | Magnesium transporter | 3.01 | 7.77 | |
| CP4_1648 | AM596_07745 | Phosphopyruvate hydratase | 5.33 | 0.00 | |
| CP4_1816 | AM596_08535 | PTS system, IIC component | 4.17 | 10.72 | |
| CP4_1817 | AM596_08540 | Probable phosphotransferase enzyme IIB component | 2.96 | 4.64 | |
| CP4_1819 | AM596_08550 | 6-Phosphofructokinase | 77.67 | 0.00 | |
| CP4_1947 | AM596_09175 | Conserved hypothetical protein | 3.62 | 12.41 | |
| CP4_2614 | AM596_12415 | CTP synthase | 3.25 | 7.77 | |
| CP4_2695 | AM596_12805 | Inosine-5′-monophosphate dehydrogenase | 3.34 | 7.77 | |
| CP4_2724 | AM596_12945 | Putative cadmium efflux system accessory protein | 2.44 | 7.77 | |
| CP4_2788 | AM596_13240 | Chain B X-ray structures | 16.21 | 12.41 | |
| CP4_2799 | AM596_13295 | Thioredoxin reductase | 2.06 | 10.72 | |
| CP4_2800 | AM596_13300 | Thioredoxin | 2.79 | 7.77 | |
| CP4_2802 | AM596_13310 | Phosphoenolpyruvate-protein phosphotransferase | 3.96 | 2.92 | |
| CP4_2909 | AM596_13825 | UDP-N-acetylmuramoylalanine-d-glutamate ligase | 9.48 | 7.77 | |
| CP4_2940 | AM596_13975 | Two-component sensor histidine kinase | 2.01 | 7.77 |