TABLE 2.
Genes downregulated in CP1ΩagrB compared to wild-type CP1
| Locus tag | GenBank accession no. | Gene | Putative gene product | Fold change | q value (%) |
|---|---|---|---|---|---|
| CP4_0126 | AM596_00605 | Glucose kinase | −8.53 | 0.00 | |
| CP4_0211 | AM596_01000 | colA | Microbial collagenase | −3.07 | 7.77 |
| CP4_0349 | AM596_01670 | Transcriptional regulator | −2.05 | 10.72 | |
| CP4_0398 | AM596_01900 | Pyruvate kinase | −2.22 | 7.77 | |
| CP4_0473 | AM596_02265 | Phosphopentomutase | −12.79 | 0.00 | |
| CP4_0573 | AM596_02740 | Signal peptidase I | −4.17 | 7.77 | |
| CP4_0575 | AM596_02750 | Sortase, Srtb family | −4.05 | 1.72 | |
| CP4_1164 | AM596_05510 | UBA/TS-N domain-containing protein | −2.07 | 10.72 | |
| CP4_1297 | AM596_06115 | dhaB | Glycerol dehydratase, large subunit | −6.25 | 10.72 |
| CP4_1298 | AM596_06120 | dhaC | Glycerol dehydratase, medium subunit | −6.11 | 0.00 |
| CP4_1300 | AM596_06130 | dhaF | Glycerol dehydratase reactivation factor, large | −25.47 | 0.00 |
| CP4_1301 | AM596_06135 | Glycerol dehydratase reactivation factor, small | −10.38 | 1.72 | |
| CP4_1302 | AM596_06140 | ATP:cob(I)alamin adenosyltransferase | −10.13 | 0.00 | |
| CP4_1303 | AM596_06145 | dhaG | DhaG protein | −7.33 | 0.00 |
| CP4_1304 | AM596_06150 | dhaT | 1,3-Propanediol dehydrogenase | −6.04 | 4.08 |
| CP4_1328 | AM596_06270 | Conserved hypothetical protein | −4.32 | 11.51 | |
| CP4_1396 | AM596_06575 | Aminodeoxychorismate synthase, component I | −2.26 | 7.77 | |
| CP4_1422 | AM596_06695 | Iron chelate ABC transporter solute-binding | −2.26 | 2.92 | |
| CP4_1497 | AM596_07060 | Conserved hypothetical protein | −4.24 | 4.08 | |
| CP4_1531 | AM596_07215 | Coenzyme A substrate-specific enzyme activase | −2.19 | 10.72 | |
| CP4_1720 | AM596_08080 | Sodium:neurotransmitter symporter family | −3.01 | 2.92 | |
| CP4_1915 | AM596_09015 | Lipoprotein, putative | −13.79 | 0.00 | |
| CP4_1916 | AM596_09020 | agrB | Accessory gene regulator protein B | −35.45 | 0.00 |
| CP4_2070 | AM596_09775 | Ribosomal protein S16 | −2.55 | 7.77 | |
| CP4_2113 | AM596_09990 | Fe-S oxidoreductase | −2.84 | 4.64 | |
| CP4_2294 | AM596_10880 | Adenine phosphoribosyltransferase | −2.00 | 1.72 | |
| CP4_2457 | AM596_11635 | Deoxyribose-phosphate aldolase | −3.80 | 0.00 | |
| CP4_2753 | AM596_13080 | Na+/H+ antiporter family protein | −4.07 | 10.72 | |
| CP4_2949 | AM596_14020 | Nucleoside permease Nupx | −6.95 | 4.64 | |
| CP4_3445 | AM596_16310 | Putative radical SAM domain-containing protein | −15.75 | 0.00 | |
| CP4_3449 | AM596_16320 | netB | Necrotic enteritis toxin B | −27.03 | 0.00 |
| CP4_3450 | AM596_16325 | netH | Ricin-type beta-trefoil domain protein | −29.24 | 0.00 |