TABLE 3.

Transcripts significantly up-regulated in ECM

Function	GenBank accession no.	Best database matcha	Expected valueb	Bayes.lnpc	PPDEd	Fold change between ECM and EM
Metabolism, cell rescue, and transport	CN072155	Phosphatidylserine decarboxylase (Psd) (Arabidopsis thaliana)	6e−04	4.38E−06	0.996	23.98
	CN072156	CipC protein (Emericella nidulans)	2e−12	9.24E−06	0.993	21.41
	AF114848	Manganese superoxide dismutase (Paxillus involutus)	7e−43	5.00E−04	0.910	8.06
	CN072157	Guanine nucleotide binding protein beta subunit (Lentinula edodes)	8e−53	1.37E−03	0.840	5.79
	CN072158	Polyubiquitin (Bos taurus)	3e−48	8.91E−03	0.590	4.19
	CN072159	Inorganic diphosphatase (EC 3.6.1.1) (Kluyveromyces marxianus var. lactis)	2e−33	2.06E−02	0.450	3.26
	CN072162	Rehydrin-like protein (Candida albicans)	5e−41	1.07E−02	0.561	2.17
	CN072163	Symbiosis-related protein (Laccaria bicolor)	2e−17	4.35E−02	0.333	1.97
Protein synthesis and transcription	CN072164	Ribosomal protein L12 (Neurospora crassa)	3e−40	2.61E−04	0.940	12.64
	CN072165	60S ribosomal protein 19-a (Schizosaccharomyces pombe)	3e−35	5.25E−04	0.907	8.47
	CN072166	Translation initiation factor eIF1; Sui1p (Saccharomyces cerevisiae)	8e−24	1.05E−03	0.860	7.92
	CN072167	60S ribosomal protein L36 (S. pombe)	1e−07	1.11E−03	0.854	6.55
	CN072168	Ribosomal protein S9 (S. pombe)	2e−33	3.81E−03	0.718	5.62
	CN072169	40S ribosomal protein S27 (S. pombe)	7e−24	4.37E−03	0.699	5.51
	CN072170	Ribosomal protein S28 (N. crassa)	1e−32	2.80E−03	0.759	5.33
	CN072171	Ribosomal protein L26 (Oryza sativa)	1e−08	2.87E−03	0.755	5.31
	CN072172	60S ribosomal protein L12 (Rattus norvegicus)	4e−53	7.10E−03	0.626	5.30
	CN072173	Ribosomal protein L35 (Paracoccidioides brasiliensis)	9e−10	4.02E−03	0.711	5.30
	CN072174	Ribosomal protein 10 (C. albicans)	2e−27	3.51E−03	0.730	5.10
	CN072175	Cytoplasmic ribosomal protein S7 (Podospora anserina)	3e−12	3.00E−03	0.750	4.90
	CN072176	Elongation factor 3 (Cryptococcus neoformans var. neoformans)	1e−11	4.24E−03	0.704	4.51
	CN072177	Homology to rat L35a; Rpl33ap (S. cerevisiae)	6e−33	1.29E−02	0.529	4.30
	CN072178	40S ribosomal protein S12 (S. pombe)	1e−17	6.85E−03	0.632	4.15
	CN072179	Ribosomal protein S3a (Cicer arietinum)	5e−69	1.03E−02	0.567	4.13
	CN072180	Heat shock protein 90 (Trypanosoma cruzi)	2e−23	6.10E−03	0.650	4.12
	CN072181	Elongation factor Tu; mitochondrial precursor (S. pombe)	3e−09	1.04E−02	0.565	3.51
	CN072197	40S ribosomal protein S3ae (C. albicans)	9e−57	1.87E−02	0.466	3.44
	CN072182	Ribosomal protein L11 (Oryzias latipes)	3e−18	1.87E−02	0.466	3.38
	CN072183	60S ribosomal protein L27a (Mortierella alpina)	7e−24	2.19E−02	0.441	3.15
	CN072184	Rat S25; Rps25ap (S. cerevisiae)	1e−19	1.19E−02	0.543	3.05
	CN072185	Alpha-NACe protein (A. thaliana)	2e−14	2.62E−02	0.411	3.02
	CN072186	Translation initiation factor elF4A.1 (rabbit)	8e−93	4.70E−02	0.322	2.85
	CN072187	Ribosomal protein L41 (Coprinopsis cinerea)	8e−42	4.38E−02	0.332	2.70
Unknown	CN072188	No homology	ND	8.22E−05	0.971	11.50
	CN072189	No homology	ND	2.91E−04	0.935	9.48
	CN072190	Predicted protein	3e−12	1.46E−03	0.830	6.69
	CN072191	Hypothetical protein	3e−04	6.23E−03	0.647	5.43
	CN072192	No homology	ND	2.66E−03	0.765	5.26
	CN072193	No homology	ND	5.24E−03	0.673	4.87
	CN072194	Hypothetical protein (Schizophyllum commune)	9e−06	4.44E−03	0.697	4.82
	CN072195	No homology	ND	8.00E−03	0.607	4.48
	CN072196	Hypothetical protein	1e−05	1.85E−02	0.469	3.61
	CN072198	No homology	ND	1.41E−02	0.514	3.33

^aBest database match and corresponding species obtained with BLASTX search.

^bDegree of similarity to known genes given by BLASTX. ND, not determined.

^cP value associated with the Bayesian t test of log-transformed data.

^dPPDE, a posteriori probability of differential gene expression between ECM and EM.

^eNAC, nascent.