Table 3.

Concordance for GO terms found using goana function

PE vs SE	Exp 1a	Exp 2a	Exp 3a	Exp 4a
Top 20 GO terms	95	65	85	100
Top 50	84	94	88	96
Top 100	79	91	94	98
Top 200	84	86	94	97
Top 300	88	87	85	99
PE vs NS		Exp 2b	Exp 3b	Exp 4b
Top 20 GO terms		40	75	95
Top 50		86	84	90
Top 100		88	91	96
Top 200		78	95	96
Top 300		80	88	96

^aPercentage concordance in the top GO terms (by FDR) found using the goana function of limma when using the SE and PE datasets for each of the experiments

^bPercentage concordance in the top 20 GO terms (by FDR) found using the goana function of limma when using the SE and PE datasets for each of the experiments