Table 2. Comparison of major features of 18 Poaceae chloroplast genomes from Ehrhartoideae and Bambusoideae subfamilies.
Subfamily | Tribe (Subtribe) | Species | Total size | LSC region | IR region | SSC region | GenBank Accession | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Length (bp) | GC (%) | Length (bp) | GC (%) | Length (bp) | GC (%) | Length (bp) | GC (%) | ||||
Ehrhartoideae | Oryzeae (Oryzinae) | Oryza sativa ssp. indica | 134,496 | 39.00 | 80,553 | 37.11 | 20,798 | 44.35 | 12,347 | 33.32 | NC_008155 |
Oryza sativa ssp. japonica | 134,551 | 39.00 | 80,604 | 37.11 | 20,802 | 44.35 | 12,343 | 33.37 | AY522330 | ||
Oryza nivara | 134,494 | 39.01 | 80,544 | 37.12 | 20,802 | 44.35 | 12,346 | 33.33 | NC_005973 | ||
Oryza barthii | 134,674 | 38.99 | 80,685 | 37.10 | 20,804 | 44.34 | 12,381 | 33.33 | NC_027460 | ||
Oryza glumipatula | 134,583 | 38.99 | 80,613 | 37.09 | 20,807 | 44.34 | 12,356 | 33.32 | NC_027461 | ||
Oryza punctata | 134,911 | 39.00 | 80,955 | 37.10 | 20,813 | 44.36 | 12,330 | 33.37 | NC_027676 | ||
Oryza officinalis | 134,604 | 38.97 | 80,623 | 37.08 | 20,797 | 44.35 | 12,387 | 33.28 | NC_027463 | ||
Oryza australiensis | 135,224 | 38.95 | 81,074 | 37.07 | 20,840 | 44.33 | 12,470 | 33.18 | KJ830774 | ||
Oryza brachyantha | 134,604 | 38.98 | 80,411 | 37.10 | 20,832 | 44.31 | 12,529 | 33.31 | KT992850 | ||
Leersia tisserantii | 136,550 | 38.88 | 81,865 | 37.01 | 21,329 | 44.05 | 12,027 | 33.23 | JN415112 | ||
Oryzeae (Zizaniinae) | Zizania latifolia | 136,461 | 39.00 | 82,115 | 37.13 | 20,878 | 44.42 | 12,590 | 33.18 | KT161956 | |
Zizania aquatica | 136,364 | 39.02 | 82,013 | 37.14 | 20,879 | 44.41 | 12,593 | 33.31 | KJ870999 | ||
Rhynchoryza subulata | 136,303 | 39.00 | 82,029 | 37.14 | 20,840 | 44.36 | 12,594 | 33.40 | JN415114 | ||
Chikusichloa aquatica | 136,563 | 39.04 | 82,314 | 37.21 | 20,838 | 44.37 | 12,573 | 33.41 | KR078265 | ||
Chikusichloa mutica | 136,603 | 39.04 | 82,327 | 37.20 | 20,839 | 44.37 | 12,598 | 33.37 | KU696970a | ||
Potamophila parviflora | 134,551 | 39.07 | 80,604 | 37.19 | 20,800 | 44.32 | 12,347 | 33.58 | GU592210b | ||
Ehrharteae | Microlaena stipoides | 134,551 | 39.22 | 80,613 | 37.28 | 20,793 | 44.18 | 12,343 | 33.77 | GU592211b | |
Bambusoideae | Bambusodae | Phyllostachys propinqua | 139,704 | 38.88 | 83,227 | 36.96 | 21,800 | 44.23 | 12,877 | 33.14 | JN415113 |
a Sequenced in this study;
b unfinished chloroplast genome.