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. 2017 May 24;146(20):205101. doi: 10.1063/1.4983485

FIG. 4.

FIG. 4.

Schematic depiction of the interaction free energy method to calculate charge renormalization in macromolecules. The electrostatic potential distribution in an electrolyte-filled parallel-plate slit of height 2h is obtained by solving the non-linear Poisson-Boltzmann equation using constant charge boundary conditions, both with (left) and without the object (right). The average electrical potential ψ(s)z* in the slit is evaluated over the dashed circular contour representing the “virtual” surface of an object placed at z=z*+R=h (right). Electrostatic interaction free energies, F(z*), are calculated for an object of charge, Q, and radius, R, located at the mid-plane of the slit, at an inter-surface separation, z*=hR, using the ψ(𝐫) distribution (left) and Eq. (9). Dashed vertical lines denote axes of cylindrical symmetry.