Table 1.
Summary of the data sources.
| Category | Description | Detail | Source | References |
|---|---|---|---|---|
| Genome | Zhongzhi13 | 274 Mb | Sinbase | 6, 27 |
| Mishuozhima | 254 Mb | SesameHapMap | 5 | |
| Baizhima | 267 Mb | SesameHapMap | 5 | |
| Genome variation | SNPs | 1,332,025 SNPs | Publication | 5 |
| Indels | 506,245 Indels | Publication | 5 | |
| Transposons | 525,537 transposons | Publication | 5 | |
| Population SNPs | 5,407,981 SNPs | SesameHapMap | 2 | |
| Germplasm information | Core collections | 705 accessions | Publication | 2 |
| Phenotype | Agronomic traits | 56 traits | Zhang’s group | |
| Gene expression | Difference in tissues | 27,148 genes in 5 tissues | Zhang’s group and NCBI (SRA122023) | 6 |
| Root under waterlogging stress | 27,148 genes in 5 stress points | NCBI (SRX1406650) | 18 | |
| Stem tip and leaf of determinate growth plant | 27,148 genes in 2 developmental stages | Zhang’s group | ||
| Developing seeds | 27,148 genes in 5 developmental stages | Zhang’s group | ||
| Gene family | MADS-box, AP2 and Hsf | 219 genes | Publications | 16, 17, 37 |
| Transcription factor and common gene families | 3,867 genes of 26 gene families | Zhang’s group | ||
| Candidate gene | Oil quality and production related genes | 47 genes | Publication | 2 |
| SSR | Genomic SSRs | 104,836 SSRs | Zhang’s group and publication | 9 |
| Polymorphism SSRs | 218 SSRs | Publications | 7, 8, 9 |