. 2017 Apr 26;35(3):366–378. doi: 10.1007/s11105-017-1030-6

Table 5.

SNPs in DArT sequences and ScBx genes significantly and stably associated with R-R, PHS-R and AMY

Type of association analysis	SNP ID/(consensus map position—chromosome position)^a	SNP location	R-R		PHS-R		AMY
Type of association analysis	SNP ID/(consensus map position—chromosome position)^a	SNP location	−log₁₀ (P value)^a	Allelic effect^b	−log₁₀ (P value)	Allelic effect ^b	−log₁₀ (P value)^a	Allelic effect ^b
GWAM	5200240/-	X			2.94	3.88
	5217029/5RL, 160^Mil	X			2.97	2.81
	3745935/6RS, 35.9 ^Mil	X			3.46	−4.72
	5802575/3RL, 105 ^Mil	X			3.23	−3.16
	3595498/6RS, 15.9 ^Mil	X			3.45	−3.94
	3602388/2R, 110.7^Mar	X			3.35	−2.33
	7104304/-				2.94	1.06
	3581291/1RL, 168.7 ^Mil	X					4.02	0.24
CGAM	ScBx4_1583/5RS	First intron	2.24	−0.14
	ScBx1_1367^c/7RS	Promoter			2.35	2.82
	ScBx1_2474/7RS	Promoter			2.08	2.68
	ScBx1_4515^c /7RS	Seventh exon			2.19	2.61
	ScBx1_4663/7RS	3′UTR			2.53	2.70
	ScBx1_4736/7RS	3′UTR			2.20	2.36
	ScBx4_1627/5RS	First intron			2.17	2.97

Map positions of ScBx genes—according to Sue et al. (2011). ^Mil—maps of Milczarski et al. (2011); Milczarski et al. (2016); Bolibok-Brągoszewska (unpublished) and Milczarski et al. (unpublished); ^Mar—map of Martis et al. (2013)

^aFor GWAM-based markers

^bAllelic (SNP) effects refer to the ALT allele with respect to the REF allele

^cMarkers validated in KASP analysis;